KEGG   Streptococcus parauberis: STP_0981
Entry
STP_0981          CDS       T01504                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
stk  Streptococcus parauberis
Pathway
stk03410  Base excision repair
stk03430  Mismatch repair
stk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:stk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    STP_0981
   03430 Mismatch repair
    STP_0981
   03440 Homologous recombination
    STP_0981
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stk03400]
    STP_0981
DNA repair and recombination proteins [BR:stk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     STP_0981
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     STP_0981
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      STP_0981
SSDB
Motif
Pfam: ssDNA-exonuc_C RecJ_OB DHH DHHA1
Other DBs
NCBI-ProteinID: AEF25429
Position
complement(1041635..1043842)
AA seq 735 aa
MIRAKYDWIINEKKPDDGFFKLAKKKSLSQDICRLLYDRGIDEEKKLDHFLRADLSDLND
PYLLNDMDKAVNRIRTAIENFEQILVYGDYDADGMTSASIMKETLEMMGAEALIYLPNRF
TDGYGPNESVYKYFIEQNQVSLIITVDNGVAGHEAIAYAQAAGVDVIVTDHHSLPDQLPQ
AYAVIHPEHPEADYPFKKLAGCGVAFKLACALLETVPTEFLDLVAIGTIADMVSLTDENR
VLVKNGLKVLKMSERQGLQELMTISGVDLDAIDEDTVGFKIAPQLNALGRLDDPNPAIEL
LTGFDDEEARDIALMINEKNEERKSLVQTIYNEAVEMVDLSKPVQVLAKAGWHPGVLGIV
AGRILEEISQTVIVLNIENGVAKGSARSIEAINIFDALNHQRELMTAFGGHSGAAGMTLP
AENIQALSDSITDYVVSEKIDTSQKNSLKIDSWLDLDHLSLEFLKELNILAPFGMDNKKP
VFALKDFTVVQARTMGADQSHLKLRIKNGSVETDVVAFNQGQYHLEYSQLADLELAVTLT
VNSWNGNTSLQLMLVDARATKSPQLFDFRARNMTLPDDISDIMVENDGQEVAIIDLPEDL
EALRQQFQKRHFEAIYFKNNIDKPYYLSGSGSKDQFARLYKTIYQFPEFDVRFKLSQLSD
YLKIEKYLLVKMIQIFNELGFVAIDNGLMTVNKDASKRDIADSKTYQELQKLVKYQELMS
LGTPQEIYDFLVNED
NT seq 2208 nt   +upstreamnt  +downstreamnt
atgataagagccaaatatgattggattataaatgaaaagaagccagatgatggcttcttt
aaactagcaaagaaaaaaagtcttagtcaagacatatgtcggctcctttatgatagagga
attgatgaggaaaaaaaattagaccattttcttcgggccgacctttctgacttaaacgat
ccctatttattaaatgatatggacaaagcggtgaacagaattcggaccgccattgaaaac
tttgaacagattttagtttatggagattatgatgctgatgggatgacatcggcatccatc
atgaaagaaacacttgaaatgatgggagctgaggctttaatctacctccccaaccgtttt
acagatggttatggtccaaatgaaagcgtctataagtatttcattgagcaaaaccaagtt
agtttaattattacagttgataatggggttgcgggtcacgaagccattgcttacgcgcaa
gcagcaggtgtcgatgtgattgtcacggaccatcactctctacctgatcaattaccacaa
gcttacgcagttattcacccagaacatccagaagctgactatccttttaaaaaattagcc
ggctgtggcgttgcttttaaactggcctgcgccctgctagaaacagttccaactgaattt
ctggatttagtggctattggtactattgcggatatggtttccttaacggatgaaaatcgc
gttttagtaaagaatggcttgaaagtcctaaaaatgagtgaacggcaaggtttacaagaa
ttaatgactatttcaggagttgatttagacgctattgatgaggatactgttggttttaaa
attgccccgcaattaaatgctctaggtcgcttagatgatcctaatccagcaattgaactc
ttgactggatttgatgatgaagaagcccgtgacattgccctcatgattaatgaaaaaaac
gaagagcgtaaaagcttggttcaaactatttataatgaagctgttgagatggttgactta
agtaaaccagttcaagttctggctaaggccggctggcatcctggtgtacttgggattgtt
gctgggagaattcttgaagaaatcagtcaaacagttatcgtcttgaatattgaaaatggg
gttgctaaaggctctgctcgctcaatagaggctattaatatatttgatgccttaaatcat
caacgagaattgatgactgcttttggtggtcacagtggtgcagctgggatgaccttacca
gctgaaaatattcaagctttatcagattccataactgattacgttgtctctgaaaagatt
gatacaagtcaaaaaaatagtttaaaaattgatagttggttagatcttgatcacttgagt
ttggaattcttgaaagaattgaatatcttagctccatttggcatggacaataaaaaacct
gtttttgctctcaaagatttcacagttgttcaagcacggactatgggtgctgatcaaagt
cacttgaagctccggataaaaaatggttcagttgaaactgatgttgttgcctttaatcaa
ggacaatatcatttagaatatagtcaactggctgatttagaattggccgtgactttgaca
gttaattcttggaatggaaacaccagtcttcagcttatgttagtcgatgccagggctacc
aaaagtccgcaattatttgatttcagggctagaaatatgactttgccggatgatatttca
gatatcatggtggaaaatgatggtcaggaagtagctattattgatttgccagaggatttg
gaggctttgcgccagcaattccaaaagagacattttgaagctatttacttcaaaaataat
attgataagccttattatctttccggttctggtagtaaggatcagtttgcaagattatat
aaaacgatttaccaatttccggaatttgatgttcgttttaaattaagtcagttaagtgat
tacttgaaaattgaaaaatatcttttagttaaaatgattcaaatttttaatgaattaggt
tttgttgcaattgataatggtttaatgacggttaataaggatgcatcaaaacgtgacatc
gcggatagtaaaacttatcaagaattacaaaaactagttaagtatcaagagctaatgtca
cttggaacaccgcaagaaatttatgattttttggttaatgaagattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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