KEGG   Salinispora tropica: Strop_1288
Entry
Strop_1288        CDS       T00504                                 
Name
(GenBank) Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
stp  Salinispora tropica
Pathway
stp03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:stp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Strop_1288
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stp03400]
    Strop_1288
Enzymes [BR:stp01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Strop_1288
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Strop_1288
DNA repair and recombination proteins [BR:stp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Strop_1288
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N
Other DBs
NCBI-ProteinID: ABP53758
UniProt: A4X4F8
Position
1447321..1448184
AA seq 287 aa
MPELPEVETVRQGLAQWVTDRRIAEVQVLHPRAVRRHAAGAAHFADVLRETTVRDVRRRG
KYLWLPLDSGDAVVGHLGMSGQLLLQPAAAPDETHLRVRFRFADDGPELRFVDQRTFGGL
SVSAGGAELPTEIAHIARDPLDPEFSDATFVAALRRRRTEIKRALLDQTLLSGVGNIYAD
EALWRARLHGTRPTDGLTGPAVLRLLGHVRDVLGEAVKEGGTSFDALYVNVNGESGYFDR
ALNVYGRADQPCRRCGEPVRREAFMNRSSFSCPRCQPRPRRAVPARG
NT seq 864 nt   +upstreamnt  +downstreamnt
gtgcctgagctgccggaggtcgagaccgtccggcaggggctggcgcagtgggtgaccgac
cggcggatcgccgaggtgcaggtactgcacccgcgcgcggtgcgccgacacgcggccggt
gccgcccacttcgccgacgtgctcagggaaacgacggtccgggacgtgcggcggcgcgga
aagtacctgtggctaccgctggacagcggcgatgccgtagtcgggcacctcggtatgtcg
gggcagctgctcctgcagccggctgcggcaccggacgaaacccacctccgggtccggttc
cggttcgccgacgacggacccgagttgcgctttgtcgaccagcggacgttcggtgggttg
tcggtcagcgcggggggcgcggagctgcccacggagatcgcacacattgcccgggacccg
ttggacccggagttctccgacgccacgttcgtcgcggcgctccgccgccgccgtaccgag
atcaagcgggctctgctggatcagacgctgctctccggcgtgggcaacatctacgccgac
gaggcgctctggcgagctcggctgcacggcacccgccccaccgacgggctgaccggcccg
gccgtgctgcgcctgcttggacacgtccgggatgtgctcggcgaggcggtcaaggagggc
ggaacgagcttcgacgccctgtacgtcaacgtcaacggcgagagcggctacttcgatcgg
gcgctgaacgtatacgggcgggcggaccagccgtgccggcggtgcggtgaaccggtgcgc
cgcgaggcgttcatgaaccggtcgtcgttcagctgcccgcgctgccagccgcggccccgc
agggcggtaccggctcgcggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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