KEGG   Salinispora tropica: Strop_3739
Entry
Strop_3739        CDS       T00504                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
stp  Salinispora tropica
Pathway
stp03420  Nucleotide excision repair
stp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Strop_3739
   03430 Mismatch repair
    Strop_3739
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stp03400]
    Strop_3739
Enzymes [BR:stp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Strop_3739
DNA repair and recombination proteins [BR:stp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Strop_3739
   MMR (mismatch excision repair)
    Other MMR factors
     Strop_3739
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 HRDC UvrD_C_2 AAA_30
Other DBs
NCBI-ProteinID: ABP56170
UniProt: A4XB71
Position
complement(4282291..4284450)
AA seq 719 aa
MVSHSASDRVLAGLDPEQRAAVTAPAGPVCVLAGAGTGKTRAVTSRIAHRTLTGEILARH
LLAVTFTARAAAELRSRLTALGVPGVQARTFHAAALRQVRYFAPRLLAGRAMPELLDSKV
RLVTLAAAKVGIRSDRAGVRDLAGEIEWAKSSLVEPGEYVVAAARALRDTPYEPARVADV
FAAYEKAKRAGGVIDFEDMLRAAIWGIEDHPDVADQVRAQYRHFVVDEYQDVNPLQQRLL
EAWLGGGDDLTVVGDASQTIYSFTGATSSYLVDFPRRYRGATVVRLVRDYRSTPQVVGLA
NSVIAPARGAEARLRLELVGQRPPGPEPELRIFTDEPAEAAAVAARCRALVDAGTPAREI
AVLFRTNAQSEAYEEALTEAEVPYQVQGAERFFERVEVRQAMVALRAATRSLPGGTPLPA
AVVEALAAVGWAPDTPPAGGAARERWAALAALVQLAEEYAANAPVLPIGPAAAVERPATL
ADFTDELARRAAAQHVPTVEGVTLASLHSAKGLEWDAVFLVGLAEGTLPTTYAKTPEQVE
EERRLLYVGITRAREWLWLSYASARSPGGRPRRPCRFLPRLDSSGTSVRAGASGVRRTER
RRTQIVSCRVCGTTLLAGAERKLGRCTACPSDMDKELHGRLGEWRRRVAGGQRVPDYVVF
TDATLVALAERRPQQPRDLTAIAGIGSRKLGLYGEAVLALVAGATVDEVCPERTFKILP
NT seq 2160 nt   +upstreamnt  +downstreamnt
gtggtgtcccactcagcgtccgaccgggtgctcgccggcctcgacccagagcagcgggcg
gcggtgaccgctccggccggcccggtctgcgtcctggccggtgccggcaccgggaagacc
agggcggtcacctcccggatcgcccatcggacgttgaccggggagatcctggcccggcac
ctgctcgcggtcaccttcaccgcgcgggccgccgccgagctgcgcagccggctcaccgcg
ctcggggtaccgggtgtacaggcgcgcaccttccacgcggcggcgctgcgtcaggtgcgg
tacttcgcgccccggctgctcgccggtcgggcgatgcccgaactgctggacagcaaggtc
cggctggtcaccctcgccgcggcgaaggtcgggatccgctccgaccgggccggtgtccgg
gacctcgcgggcgagatcgagtgggcgaagtcgtccctggtcgagcccggggagtacgtg
gtcgcggctgcccgggcgctgcgggacaccccgtacgagccggcgagggtggccgatgtc
ttcgccgcgtacgagaaggcaaaacgcgccggtggggtgatcgatttcgaggacatgctg
cgtgccgcgatctggggaatcgaagaccacccggacgtggccgaccaggtacgcgcccag
taccggcacttcgtcgtcgacgagtaccaggacgtcaacccgctccagcagcggctgctg
gaggcgtggctcggtggcggagacgacctgacggtggtgggtgacgcaagccagacgatc
tactcgttcaccggtgcgacctcgtcctacctggtcgacttcccccgtcggtaccgtggt
gcgacggtggtccgtctggtgcgcgactatcgctccacccctcaggtggtcgggctggcc
aactcggtcatcgcaccggcccggggcgccgaggcgcggcttcggctggagctggtcggc
cagcgcccgccgggccccgagcccgagttacggatcttcaccgacgagccggccgaggcc
gccgccgtcgccgcccgctgccgtgccctggtggacgccggcacaccggcccgggagatc
gccgtgctgtttcggaccaacgcgcagtccgaggcgtacgaggaggcgctgaccgaggcc
gaggtgccgtaccaggtgcagggcgcggagcggttcttcgagcgcgtcgaggtacggcag
gcgatggttgcgctgcgcgccgccacccgttcccttcccggtggaaccccgctgccggcg
gccgtggtcgaggcgttggccgcggtgggctgggcaccggatacaccgccagccggtggg
gctgcccgggaacggtgggcggccctcgccgccctggtccagctcgccgaggagtacgcc
gccaacgccccggtgctgccgatcgggccggccgccgcggtcgagcggccggccacgctg
gccgacttcaccgacgagctggcccggcgcgccgccgcgcagcacgtgccgacggtcgag
ggcgtgacactcgcctcgctgcattcggcgaagggtctggagtgggatgccgtcttcctg
gtcggcctcgccgagggcaccctgcccaccacctacgcgaagacaccggagcaggtggag
gaggagcgccggttgctctacgtgggcatcacccgggctcgggagtggctctggttgtcg
tacgcctcagctcgctcaccgggagggcgtcctcggcggccctgtcgcttcctgccccgg
ctggactcctccggcaccagtgtgcgggctggcgcgagcggggtacggcggaccgagcgt
cggcgtacccagatcgtctcctgccgggtctgcggtacaactcttctcgccggcgcggag
cgtaagctgggccgctgcaccgcctgtccatccgacatggacaaggagctgcacgggcgg
ctgggcgagtggcggcgtcgggtggccggcggccagcgggtaccagactacgtggtgttc
accgacgcgacattggtcgcgttggcggagcggcgcccgcagcagccccgcgacctcacc
gcgatcgcgggaatcggttcccggaagctggggctctacggggaggcggtgctggccctg
gtagctggcgcgacggtggacgaggtctgcccggagagaactttcaaaatcttgccctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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