KEGG   Spirochaeta thermophila DSM 6578: Spith_0543
Entry
Spith_0543        CDS       T02016                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
stq  Spirochaeta thermophila DSM 6578
Pathway
stq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:stq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Spith_0543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:stq03021]
    Spith_0543
   03400 DNA repair and recombination proteins [BR:stq03400]
    Spith_0543
Enzymes [BR:stq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Spith_0543
Transcription machinery [BR:stq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Spith_0543
DNA repair and recombination proteins [BR:stq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Spith_0543
SSDB
Motif
Pfam: RNA_pol_A_CTD RNA_pol_L RNA_pol_A_bac HHH_5 RAD51D_N RNA_pol_L_2
Other DBs
NCBI-ProteinID: AEJ60823
UniProt: G0G9S3
Position
629554..630645
AA seq 363 aa
MARKNLLKGFVLPTSITVEHLDTNTHYGKFAAYPFERGYGVTIGNTLRRILLSSIQGYAI
SAVRITWYDDQGAAHVLSSEYEQIPGVVEDTLELLANLKLLRVQLPDEMEQKTVMVEFKG
PKEVTGADFEVDQLEVMNKDFRVMTLMEDAHFEMEMQVDLGRGYVPAEVQKNYIEVVGTI
PLDALYSPVQRVRFNVENTRVGHRSDYDKLILEVWTDGSISPEDALGEAAKLAKEHFTVF
INFDEDAISHVRQLDHEEEQIRRLLETPIEELELSVRSSNCLKNANIRTIGDLVSKSEEE
LSKTRNFGKKSLLEIKEKLKEWNLSLGMRDPSAYKAALERVRLPESQESESTTEEEENDE
TQD
NT seq 1092 nt   +upstreamnt  +downstreamnt
atggcacgtaagaacctccttaagggatttgtgctgcccacgagtatcacggtggagcat
ctcgatacgaacacccattacggcaagttcgccgcgtatcctttcgagagggggtacggg
gtgaccatcgggaacacactccggcggatactcctctcatcgatacagggatatgcgatc
tccgcggtgcgtatcacgtggtacgacgaccagggcgcggcccacgtgctctcgagcgag
tacgagcagattccgggtgtggtggaggataccctggagttgctcgccaacctcaagctc
ctgagggtccagttgcctgacgagatggagcagaagacggtgatggtggagttcaagggc
ccgaaggaggtcaccggggcggacttcgaggtggatcagctcgaggtgatgaacaaggac
ttcagggtgatgaccctcatggaggatgcacacttcgagatggagatgcaggtggatctc
ggacgcggatacgtaccggccgaggtccagaagaactatatcgaggtcgtgggtacgatc
ccgctcgatgcgctctactcgccggtgcagcgtgtgcgtttcaatgtggagaacacgcgt
gtgggccacaggtcggattacgacaagctcattctggaggtctggaccgacgggtccatc
tcgccggaggatgcgctgggcgaagcggcgaagctggcgaaggagcacttcacggtcttc
atcaacttcgatgaggatgcgatctcccacgtccgtcagctcgatcacgaagaggaacag
atccggaggctcctcgagaccccgatcgaggagctcgagctctcggtgaggtcgagcaat
tgcctcaagaatgcgaatatccggacgatcggagatctggtgtcaaagagtgaggaggag
ctctccaagacgcgcaacttcgggaagaagtctcttctcgagataaaggagaagctcaag
gagtggaacctctcccttggtatgagggacccctctgcatataaggcggccctggagcgt
gtgcggctgcccgagagccaggagagcgagtcgactacagaggaagaggagaacgatgaa
acacaggattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system