KEGG T02619: F750

Streptomyces sp. PAMC 26508: F750_2946

Entry

F750_2946         CDS       T02619

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

strp Streptomyces sp. PAMC 26508

Pathway

strp03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:strp00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    F750_2946
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:strp03400]
    F750_2946
Enzymes [BR:strp01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     F750_2946
DNA repair and recombination proteins [BR:strp03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      F750_2946

SSDB

Motif

Pfam:

DEAD TRCF UvrB_inter CarD_TRCF_RID Helicase_C ResIII AAA_22 MFD_D3 4HBT_3 RecG_dom3_C UB2H

Other DBs

NCBI-ProteinID:

AGJ55421

Position

complement(3111715..3115245)

AA seq 1176 aa
MSLHGLLDVVVTDPALSEAVKAASDGHRAHVDLVGPPAARPFAVAALAREAGRTVLAVTA
TGREAEDLAAALRTLLPPDTVAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVKVVVAPVRSVLQPQVKGLGDLEPVALSSGQTADLGEVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEVAAHGLWAPPCRELL
LTEDVRTRAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKGSMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRERARELGMM
WWSTSPFAADEELDGDTLKLGMHAPEAYRGDTARALADTKGWLAEGWRTVYVTEGQGPAS
RTVEVLGGEGIAARLDPDLADLAPSLVHVSCGAIDHGFVDPALKLAVLTETDLTGQRTAS
KDLGRMPARRRKSIDPLTLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYAQFPVNVRALSRFQSDTESKA
TLEGLKDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMGESQLEQVVVDFWEKRFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYSYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVDGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEDDIRAVREELTDRYGKLP
EPVKNLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLHPKTIFKPATR
QILVPRPTAGRIGGKPVVGRELLSWTGEFLTTILGS

NT seq 3531 nt +upstreamnt +downstreamnt
atgagcctgcacggtctgctggacgtcgtcgtcaccgacccggcgctctccgaagcggtg
aaggccgcatccgacggccaccgggcccacgtcgacctggtcggcccgcccgccgcacgc
cccttcgccgtggccgcgctggcccgcgaggccggacgcaccgtgctggccgtcaccgcc
accggccgcgaggccgaggacctggccgcggcgctgcggaccctgctgccccccgacacc
gtggcggagttcccctcctgggagaccctgccccacgagcggctctcgccccgctccgac
accgtcggccgccgtctcgccgtgctgcgcaggctcgcgcacccccggccggacgacccg
gagaccggcccggtcaaggtcgtcgtcgcaccggtgcgttccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtggcgctgagcagtgggcagaccgcggatctgggc
gaggtcgtggacgcgctcgcggcagcggcgtacgcccgtgtggagctggtcgagaagcgc
ggggagttcgccgtgcgcggcgggatcctggacgtcttcccgccgaccgaggagcacccc
ctccgggtcgagttctggggcgacgacgtcgaggagatccgctacttcaagatcgccgac
cagcggtccctggaggtcgccgctcacggactgtgggccccgccctgccgtgagctgctg
ctcaccgaggacgtgcgcacccgggcggcggccctcgccgaggcgcacccggagctgggc
gagctgctggggaagatcgccgagggcatcgccgtcgagggcatggagtcgctggccccg
gtgctggtcgacgagatggagctgctgctggacgtcctgccgaagggctcgatggcgctg
gtctgcgacccggagcgggtgcggacgagggcggcggacctcgtggcgaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgggcgggggagaggccccgatcgacgtgggt
gcggcctccctgtggggcatcgccgacgtccgtgagagggcccgtgagctgggcatgatg
tggtggtccacctctccgttcgccgccgacgaggagctggacggggacaccctgaagctc
gggatgcacgccccggaggcgtatcggggcgacacggcccgggcgctcgccgacaccaag
gggtggctggccgagggctggcgcacggtgtacgtcacggaggggcagggcccggcctcc
cgtacggtcgaggtgctgggcggcgagggcatcgcggccaggctcgacccggacctggcc
gatctcgcgccctcgctcgtccacgtctcgtgcggggcgatcgaccacggcttcgtcgat
ccggcgttgaagctggccgtgctgaccgagacggacctgaccgggcagcggaccgccagc
aaggacctgggacggatgccggcgcggcgccgtaagtccatcgacccgctgaccctgcag
gcgggcgacttcatcgtccacgagcagcacggggtcggccggtacatcgagatggtccag
cgcaccgtgcagggcgcgacccgcgagtacctcctcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccggctctacatccccacggaccagctggagcaggtcaccaagtac
gtcggcggcgaggccccgaccctgcaccggctcggcggcgccgactggacgaagacgaag
cagcgggccaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtactcggcg
cgcatggcggcgcccggccacgccttcgggccggacaccccgtggcagcgtgagctggag
gacgccttcccgtacgccgagacgcccgaccagctgtccacgatcgccgaggtcaaggag
gacatggagaagtccgtcccgatggaccggctgatctgcggtgacgtcgggtacggcaag
acggagatcgcggtgcgcgcggccttcaaggcggtccaggacggcaagcaggtcgcggtg
ctcgtgccgacgacgctcctggtccagcagcacttcggcacgttcaccgagcggtacgcg
cagttcccggtcaacgtgcgggcactgagccggttccagtccgacaccgagtccaaggcg
acgctggaggggctcaaggacgggtccgtggacctggtcatcggcacgcaccggctgttc
tcgtcggagacgaagttcaaggacctgggtctggtcatcgtcgacgaggagcagcgcttc
ggtgtcgagcacaaggagcagctgaagaagctccgggccaacgtggacgtgctcacgatg
tcggcgacccccatcccccgtacgctcgaaatggccgtcacgggcatccgcgagatgtcg
acgatcacgacgcccccggaggagcggcaccccgtcctcacgttcgtcgggccgtacgag
gagaagcagatcggcgcggccgtgcgccgtgaactcctgcgtgagggacaggtcttctac
atccacaaccgggtcgagtccatcgaccgggccgcggccaggctgcgcgagatcgtgccc
gaggcgcggatcgcgacggcgcacgggcagatgggcgagagccagctggagcaggtcgtc
gtcgacttctgggagaagaggttcgacgtgctggtctcgacgacgatcgtcgagtccggt
atcgacatctcgaacgccaacacgctgatcgtggagcgcggcgacaacttcgggctctcg
cagctgcaccagttgcgtggccgtgtcggccgcggccgggaccggggctactcctacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcgtctggcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcggggaacctgctcggcggtgaacagtccggccacatcgcgggggtcggcttcgacctg
tacatccggatggtcggcgaggcggtggcggactaccgggccgccgtggacggcggggtg
gaggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccgcac
gactacgccccgggcgagcggctgcgcctccaggcgtaccgtgccatcgcctccgcgaac
tcggaggacgacatccgggcggtgcgcgaggagctcaccgaccgctacggcaagctgccg
gagccggtgaagaacctcctgctggtggcgggcctgcggatgctggcccgggcctgcggg
gtgggcgagatcgtgctgcaggggccgaacatccgcttcgcgccggtggagctgcgcgag
tcgcaggagctgcggctgaagcggctgcaccccaagacgatcttcaagccggccacgcgt
cagatcctggtaccgcgcccgaccgcggggcggatcggcgggaagccggtggtggggcgc
gaactcctctcgtggaccggggagttcctcacgacgatcctggggtcgtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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