KEGG   Streptomyces qaidamensis: A4E84_28095
Entry
A4E84_28095       CDS       T04777                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
stsi  Streptomyces qaidamensis
Pathway
stsi03030  DNA replication
stsi03410  Base excision repair
stsi03420  Nucleotide excision repair
stsi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stsi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A4E84_28095
   03410 Base excision repair
    A4E84_28095
   03420 Nucleotide excision repair
    A4E84_28095
   03430 Mismatch repair
    A4E84_28095
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stsi03032]
    A4E84_28095
   03400 DNA repair and recombination proteins [BR:stsi03400]
    A4E84_28095
Enzymes [BR:stsi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A4E84_28095
DNA replication proteins [BR:stsi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A4E84_28095
DNA repair and recombination proteins [BR:stsi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A4E84_28095
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A4E84_28095
   MMR (mismatch excision repair)
    DNA ligase
     A4E84_28095
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A4E84_28095
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 zf-TFIIB
Other DBs
NCBI-ProteinID: AMW13013
UniProt: A0A143C6G1
Position
6294869..6297064
AA seq 731 aa
MAGDKQAETTTVPAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEEE
HPELRTPDSPTQKVSGSYETEFTAVEHRQRMLSLDNTFNDEEMAAWTERIARELGEQEYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDSVPDLVE
IRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFTGLTRLSQAYDLLKTWGLPTSRHNKVVDGLEGVREFIAHFGENRHSVEHEIDGVVV
KLDQIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECP
ECGTALRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVAAAALTAPLEP
KTPPLADEGDLFDLTIEQLLPIKAYVLDPDSGLPKRDPKTGEEKVATIFANQQGEPRKNA
VAMLENIAAAKERPLARVITSLSIRHVGPVAAEALAREFRSIERIDQATEEELAVTEGVG
ATIAASLKQWFAEDWHRDIIRKWKAAGVRMEAESTGEDEGPRPLEGLTVVVTGTLEHFTR
DGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLNEDGFGVLLEQGPE
AAAEVALSAEE
NT seq 2196 nt   +upstreamnt  +downstreamnt
gtggccggcgacaagcaagcggagacgacgacggtgcccgccgaggcacgggagaagcac
gcgcgcctcgcggagcagatcgaggagcaccgcttccgctactacgtgaaggacgctccc
gtcgtcagcgacgcggagttcgaccagctgctgcgttccctggaggcgctggaggaggag
cacccggagctgcgcacgccggactcgccgacccagaaggtctccgggtcctacgagacg
gagttcacggcggtcgagcaccgccagcgcatgctctccctcgacaacacgttcaacgac
gaggagatggccgcctggacggagcgcatcgccagggaactgggcgagcaggagtaccac
ttcctgtgcgagctcaaggtcgacggcctcgcggtgaacctcacctacgagcacggccgc
ctcacccgcgccgccacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtg
cgcacgatcgccgagatccccgaccgcctcaagggcgattccgtccccgacctcgtggag
atccgcggcgaggtctacttcccgatggagaagttccaggagctcaacgcccgcctcgtc
gaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggttcactgcgccag
aaggacccgcgtgtcaccgccacccgccccctgcacatggtggtccacggcatcggcgcc
ctggagggcttcaccggcctgacccgcctctcccaggcctacgacctcctcaagacctgg
ggcctgcccacctcccggcacaacaaggtggtcgacggcctcgaaggcgtccgggagttc
atcgcccacttcggcgagaaccgccactccgtcgagcacgagatcgacggcgtggtcgtc
aagctcgaccagatccccctccagggccgcctgggctccacctcgcgcgccccgcgctgg
gcgatcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgcgtg
ggcgtgggccgcacgggccgggtcaccccctacgcccaggtcgagccggtcacggtcgcg
ggctccgaggtcgagttcgccacgctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggggacacggtcgtgctgcgcaaggccggtgacgtcatcccggagatcctcggc
cccgtcgccgacctgcgcgacggcagcgagcgcgagttcgtgatgccgagcgagtgtccc
gagtgcggcacggcgctgcggccgatgaaggagggcgacgtcgacctgcgctgccccaac
gcccgcacctgcccggcccagttgcgcgagcgcctgttctacctcgcgggccgcaaggcc
ctggacatcgagcacttcggctacgtcgccgcggccgccctcaccgccccgctggagccc
aagaccccgcccctggccgacgagggcgacctgttcgacctcaccatcgagcagctgctg
cccatcaaggcgtacgtcctcgacccggacagcgggctgcccaagcgcgacccgaagacc
ggcgaggagaaggtcgccacgatcttcgccaaccagcagggcgagccccgcaagaacgcg
gtcgccatgctggagaacatcgccgcggccaaggagcgccccctggcccgcgtcatcacc
agcctgtcgatccgtcacgtcggacccgtcgcggccgaggcgctggcccgcgagttccgc
tcgatcgagcgcatcgaccaggccacggaggaggagctggcggtcaccgagggcgtcgga
gcgaccatcgccgcctccctcaagcagtggttcgccgaggactggcaccgcgacatcatc
cgtaagtggaaggccgcgggcgtccgcatggaggccgagagcaccggcgaggacgagggt
ccgcgcccgctcgaaggcctcaccgtcgtcgtcaccggcaccctcgaacacttcactcgg
gacggcgccaaggaggcgctgcagagccgtggagcgaaggtgaccggctctgtttcgaag
aagacgtcgttcgtcgtcgtgggggacagccccggatcgaagtacgacaaggcgatgcag
ctgaaggttccggtcctgaacgaggacggtttcggcgtcctgctggagcagggaccggaa
gccgcggccgaagtcgccctttcggccgaggagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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