KEGG   Streptococcus thermophilus MN-ZLW-002: Y1U_C1752
Entry
Y1U_C1752         CDS       T02116                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
stw  Streptococcus thermophilus MN-ZLW-002
Pathway
stw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:stw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Y1U_C1752
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:stw03021]
    Y1U_C1752
   03400 DNA repair and recombination proteins [BR:stw03400]
    Y1U_C1752
Enzymes [BR:stw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Y1U_C1752
Transcription machinery [BR:stw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Y1U_C1752
DNA repair and recombination proteins [BR:stw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Y1U_C1752
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_2 RNA_pol_Rpb1_4 Peptidase_M23 FUSC
Other DBs
NCBI-ProteinID: AFJ84201
Position
complement(1700188..1703799)
AA seq 1203 aa
MQITLASPTKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWECACGKYKRIR
YKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDMSPRALEEVI
YFAAYVVIDPKETPLEPKSLLTEREYREKLQEYGHGSFVAKMGAEAIQDLLKQVDLEAEI
AELKEELKTATGQKRFKAVRRLDVLDAFYKSGNKPEWMVLNILPVLPPDLRPMVQLDGGR
FAASDLNDLYRRVINRNNRLARLLELGAPGIIVQNEKRMLQEAVDALIDNGRRGRPITGP
GSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPRLMAIELFKP
FVMREIVAREYAGNVKAAKRMVERGDERIWDILEDVIKEHPVLLNRAPTLHRLGIQAFEP
VLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLLLAAEHILNPKDGKPV
VTPSQDMVLGNYYLTMEDEGREGEGMIFKDIDEAVMAYHNGYVHLHSRVGIAVDSMPDKP
WKENQLHKILVTTVGKILFNSIIPSEIPYLQETTNENLTDSTPDKYFLEPGQDIQTVIDS
LEINAPFKKKHLGNIIAEIFKRLRTTETSAFLDRLKDLGYYYSTLAGLTVGIADIPVIDN
KQEIIDAAHHRVEEINKAFRRGLMTEDDRYVAVTTTWREAKDALEKRLIETQDPKNPIVM
MMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMT
DTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEVTETLEERLFGRYT
KKSVKHPETGEVIVGPDTLITEDMAAAIVNAGVEEVTIRSVFTCKTRHGVCRHCYGINLA
TGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQEIFEARNPKG
EAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVVPFTARMKVEVGDEVHRGEALTE
GSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDT
DLLPGTLMDISDFTDANKDIVISGGVPATSRPVLLGITKASLETNSFLSAASFQETTRVL
TDAAIRGKKDHLIGLKENVIIGKIIPAGTGMARYRNIEPLAVNEVEVIENIAVDEAIVES
SED
NT seq 3612 nt   +upstreamnt  +downstreamnt
atgcaaattacactagcttcaccaactaaggtccgttcatggtcttatggtgaggttaag
aaacctgaaacaatcaactaccgtacgctcaaaccagaacgtgaaggtctgttcgacgaa
gtgatctttggtcctactaaagactgggaatgtgcgtgtgggaaatacaaacgtatccgt
tataaagggatcgtttgtgaccgctgtggtgttgaagtaacacgtgctaaggttcgtcgc
gaacgtatgggtcacatcgagttgaaagcaccagtatcacatatctggtacttcaaggga
atcccttctcgtatgggattgactttggatatgagtcctcgtgcacttgaagaagttatt
tacttcgcagcttacgtggttatcgatccaaaggaaacaccgcttgagccaaaatctctc
ttgactgaacgtgaatatcgtgaaaaattgcaagagtatggtcatggttcatttgtcgct
aaaatgggtgcagaagctatccaagatctcttgaaacaagtagatttggaagccgaaatt
gctgaactcaaagaagagttgaagacagcaactggtcaaaaacgttttaaagcagttcgt
cgtttggacgttcttgatgccttttacaagtctggtaataaaccagaatggatggtgctt
aacatattgccagtattgccaccagatcttcgtccgatggttcaattggacggtggacgt
tttgcagcatctgacttgaacgacctctaccgtcgtgttatcaaccgtaacaaccgtttg
gctcgtttgcttgagttgggtgctccaggtatcatcgtgcaaaacgaaaaacgtatgttg
caagaagcggtagacgctcttattgataatggacgtcgtggtcgtccaattactggacca
ggtagtcgtccacttaaatctttgagccacatgcttaaaggtaaacaaggtcgtttccgt
caaaacttgcttggtaaacgtgtcgacttctctggccgttccgttattgccgttggtcca
acacttaaaatgtatcaatgtggtgtgccccgtttgatggccatcgaacttttcaaacca
tttgttatgcgtgaaatcgttgcgcgtgaatacgcaggtaacgtgaaagctgctaaacgt
atggttgagcgtggtgatgaacgtatttgggatattcttgaagatgttatcaaggaacac
ccagtgcttcttaaccgcgcacctaccctccaccgtttgggtatccaggcctttgaaccc
gtcttgattgatggtaaggctcttcgtcttcacccattggtatgtgaggcctacaatgcc
gactttgacggtgaccaaatggccatccacgttccattgtctgaagaagctcaagctgaa
gcacgtttgctccttcttgcggcagaacacatccttaaccctaaagacggtaaaccagtc
gtaacaccatctcaggatatggttcttggtaactattacttgacaatggaagatgaaggc
cgtgaaggtgaaggtatgatcttcaaggatattgatgaggcagttatggcttatcataat
ggttatgttcacttgcatagccgtgtaggtattgcagtcgatagcatgcctgataaacct
tggaaagaaaaccaacttcacaaaatcttagtaacaactgttggtaagattctcttcaac
tcaatcattccatcagaaattccatatcttcaagaaacaacaaatgagaacttgacagat
agtacaccagataaatacttccttgaaccgggccaagatatccaaacagttatcgatagt
ttggaaattaatgcgccattcaagaagaaacatcttggtaacatcattgctgaaatcttc
aaacgtcttcgtacaactgaaacatcagctttccttgaccgtttgaaagaccttggttac
tactactcaacacttgctggattgacagtgggtatcgccgatatcccagttattgataac
aaacaagaaattatcgatgctgctcaccaccgtgttgaagaaattaacaaagctttccgt
cgtggtttgatgacagaagatgaccgttatgttgctgttacaacaacatggcgtgaagcg
aaagatgcacttgaaaaacgtctgattgagacacaagatcctaagaatccaatcgttatg
atgatggactcaggagctcgtggtaacatctctaacttctctcaacttgccggtatgcgt
ggtttgatggctgcccctaacggacgtatcatggaattgcctatcctttcaaacttccgt
gaaggtttgagcgttttggaaatgttcttctctactcacggtgcgcgtaaaggtatgacc
gatacagcccttaagactgccgactctggttaccttactcgtcgtttggttgacgttgcc
caagacgttatcattcgtgaagacgattgtggaactgaccgtggtcttgttattcgtgcc
attactgatggtaaagaagtaacagaaactcttgaagaacgtctttttggtcgttacact
aagaaatctgttaaacatcctgaaactggcgaagttatcgttggtccagatactttgatt
actgaagatatggctgcagctattgtcaatgctggtgttgaagaagtaactatccgttca
gtctttacatgtaagactcgtcacggtgtctgtcgtcactgttacggtatcaacttggca
acaggtgatgcggttgaagttggtgaagcagttggtactatcgctgcccaatctatcggg
gaaccaggtacacagcttaccatgcgtaccttccacaccggtggggtagcctcaaacacc
gatatcacacagggtcttccacgtatccaggaaatctttgaagcacgtaaccctaaaggg
gaagcggttatcactgaagttaagggtactgttatcgaaatcgaagaagatgctgcgaca
cgtactaagaaagtcttcgttcaaggtaagactggaatgggtgaatatgtcgttccattt
acagctcgtatgaaagtagaagttggtgacgaagtacaccgtggtgaggccttgacagaa
gggtcaatccaaccgaaacgtctccttgaagtacgtgataccttgtcagttgaaacttat
cttcttgcagaagtgcaaaaagtttaccgtagccaaggggtagaaatcggtgacaaacac
gtcgaagtaatggttcgtcaaatgcttcgtaaagtacgtgttatggatccaggtgataca
gatctccttccaggtacacttatggatatttctgacttcacagatgctaacaaggatatt
gttatctctggtggtgttcctgcaacatctcgtccagtccttcttggtattactaaagcc
tcacttgaaacaaattcattcttatcagcggcttccttccaagaaacgacacgtgtgctt
acagatgcagctatccgtggtaagaaagatcatcttattggtcttaaagaaaatgttatc
attggtaagattatccctgctggtacaggtatggctcgctaccgtaacattgaacctctt
gcagttaacgaagttgaagttattgaaaacattgctgttgatgaagcaattgtggaatca
tctgaagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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