KEGG   Sporosarcina ureae: SporoP32a_09925
Entry
SporoP32a_09925   CDS       T04877                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sure  Sporosarcina ureae
Pathway
sure03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sure00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SporoP32a_09925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sure03400]
    SporoP32a_09925
Enzymes [BR:sure01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SporoP32a_09925
DNA repair and recombination proteins [BR:sure03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SporoP32a_09925
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII MFD_D3 RecG_dom3_C IstB_IS21
Other DBs
NCBI-ProteinID: ARK21823
Position
2006587..2010120
AA seq 1177 aa
MGVIEQLFLEEKEIQGLLNDLEDGQDQQLITGLSGGSKAIFFKLIQQSLTRPVLIVSPNM
LQAQRTYEDLSKLVSDEHIHLYTAEELVAADFSFASYELRAGRIDTLDHMARTGSGIYIT
PVAGLRKLLPSKERWLAHYVTATTDDEIDIGIWLEKLVSMGYIRKDLVSAPGEFALRGGI
LDVYPLTMAEPVRIELFDTTIDSIRTFSAEDQRSTGKLNSITLLPATEFIWTPDELQQVS
QKVEQALGESLTKIKSEELQQQLLMTIMQDIGMMKDGIVPEAMKKYASFSSEASAMLTDY
LPTNGLIIFDELGRIQESVATLESEEQEYQLSMLEDGKMLHDTKLAWKYEQVLEGIKQQR
FYLSLFTRAVPGFTIKKSISISCKPMQQFHSQMPLLKSEIERWKQGKYNVFLLASSNERM
HTIQEILREYDIEAVIDGKPSKEGMLSIIEGDLSAGFELPFQKLAVITDAELFTGKPKRK
ARAPKLTNAERIKSYSEIKPGDYIVHVHHGIGKYYGVVTLDVKGIQKDYLDIRYRGEDKL
FVPADQIDLIQKYVASGEKEPKLHKLGGTDWVKTKRKVTAAIQDIADDLIKLYARREAEK
GFAFGEDDDLQRSFENAFPYEETQDQLQSIDEIKKDMERIRPMDRLLCGDVGYGKTEVAI
RAAFKAVTNGKQVAFLVPTTILAQQHFETMKERFADYPVTVSLLNRFRTKKEQDETIKGL
KAGTVDIVIGTHRLLSKDVVYQDLGLLVVDEEQRFGVTHKEKLKQLKNNVDVLTLTATPI
PRTLHMSMMGVRDLSVIETPPANRFPVQTYVMEHNGGLVREAIEREMGRGGQVFYLYNRV
EDMDRKVQEIRDLVPEARIASAHGRMGEAALEAVILSFLEGEFDVLVTTTIIETGIDIPN
VNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYSYMLYQRDKVLTEVAENRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQLLQEAIEERQTGVVKEDKVDVE
ISLPINAYLPETYIQDGYQKIQMYKRVKAITDDEDYLELVDEMIDRFGDMPFEADLLLRV
GRMKAWGRDAGVVSIKNVQGIVEIRLSEEGTARADGAKLMERSLKFGHAVGLTIDNGQIT
VTVNEKKSNQFTEFDMVEDMVHTMQETAKEVESSDAL
NT seq 3534 nt   +upstreamnt  +downstreamnt
gtgggagtaatagaacaactttttctggaagagaaagagattcaaggcttgctgaacgat
ttagaagatggacaggatcagcagttgattacaggtctttcaggtggttccaaagcgatt
ttctttaaattaattcagcagtcactgacacgtcctgtcttgatcgtctcacccaatatg
ctgcaggcacaacgaacatatgaagatttaagtaaattggttagtgatgagcatattcac
ttgtatacagcggaagaattagttgccgcagacttttcattcgctagttatgaactgcgt
gcaggcaggattgacacgttagatcacatggcgcgtacaggcagtggtatatatatcacg
ccagtcgcgggcttgcgcaagttattgccgtcaaaggagcgctggttggcgcactatgta
acggctacgacagatgacgagattgatatagggatttggctcgagaagctggtatccatg
ggctatatacgaaaagacctggtgagtgcaccgggtgaatttgcgttgcgtggtggaata
ttagacgtctatccgctgacgatggcagaacctgtacgtattgagttattcgatacgacg
attgattcgatccgaacattttcggcagaagatcagcgttctacaggtaaattgaattca
attactttgttaccagcgaccgaatttatctggacacctgatgaattacaacaagtttca
caaaaagtggagcaagcgttgggcgaaagtttaactaaaattaaaagtgaagaattgcaa
cagcaattattgatgacgattatgcaagatataggcatgatgaaagatggtattgtgcca
gaagcgatgaagaaatacgcgtcattttcctctgaagcaagtgcgatgttaactgattac
ttgccgacaaacggtcttatcatttttgatgaattgggccgcatacaagaatcggtggct
acgttggagtcagaagagcaggagtatcagctttcgatgcttgaagacgggaaaatgcta
catgatacgaaactagcgtggaaatacgaacaagttcttgagggtattaagcagcaacga
ttctatttatcattatttacccgtgcggtacctggatttactattaagaaatctatttca
atttcttgtaagccaatgcaacaattccatagccagatgccactgctgaaaagtgaaata
gaacgttggaagcaaggtaaatataacgtctttctattagcttcttcaaatgaaagaatg
catacgatccaagagattttacgagagtatgatatagaagcagtaatagatggtaagcct
agtaaagaaggtatgttgtcgattatagaaggggatttgtctgcgggatttgaattgccg
tttcagaaacttgcggttattacagacgcagaactgtttacaggcaagccgaaacgtaaa
gcacgagcccctaaactaacgaacgcggagcggatcaaaagttactcggaaatcaagcca
ggcgactatatcgtccacgttcatcacggtattgggaaatattatggcgtcgttacactt
gatgtcaaaggcatccagaaagactatttagatattcgttaccgcggtgaagataaactc
tttgttcctgctgatcagattgatttaattcaaaagtatgtcgcgtccggtgaaaaagag
ccgaagctacataaacttggcggtaccgattgggttaaaacaaagcgcaaagtgacagca
gccatacaagatattgcagatgacttgatcaagttgtacgcaaggcgagaagcagaaaaa
ggatttgcttttggtgaagacgatgatttgcaacgttcatttgaaaatgctttcccatat
gaagaaacgcaagaccagttacaatccattgacgaaatcaagaaagatatggaacgtata
cgaccaatggatcgactgttatgtggggatgtagggtatggaaaaacggaagttgcgatc
cgtgctgcatttaaagcggtaacgaacggtaaacaagtggcctttttggttcccactact
attttggcacagcaacatttcgaaacgatgaaagaacgtttcgcagattatcctgtaacc
gtttcattacttaatcgttttcgcacgaagaaagaacaagatgaaacgatcaaaggactg
aaagcgggaactgtcgatattgtgatcggaacacatcgattattgtcaaaagacgtagtg
tatcaagatcttgggcttctcgttgtcgatgaagagcaacgttttggtgtaacacataaa
gaaaagttgaagcagttgaaaaataacgtagacgtcttgacgttgactgctacaccgatc
ccaaggactttgcatatgtcgatgatgggcgtacgtgacttgtctgtcattgaaacacca
ccagccaatcgcttccctgtccagacatatgtcatggaacataacggtggtttggtacga
gaagcaattgagcgagagatgggccgcggcggacaggtcttctatttatataatcgcgta
gaagatatggatcgcaaagtgcaggaaatccgtgacttggtacctgaagcgcgtattgcc
tctgcacacggtcgtatgggggaagctgccctggaagcggtgattttgagtttccttgaa
ggggaattcgatgtgcttgttacgacaaccatcattgaaacaggaatcgacatcccgaac
gtcaatacgttgattgttcatgacgcggatcggatggggctatcacagctctatcaattg
cgtggacgggtcggccgttcaaaccgtgtagcatacagctatatgctctatcagcgtgat
aaagtgttgactgaagtcgcggaaaatcgcttgcaggcaattaaagagttcactgaactt
ggatctggctttaaaattgcgatgcgtgatctatccattcggggggcaggaaatttactt
ggctcacagcaacatggatttattgattcagtcggtttcgatttgtattcgcaattgcta
caggaagcgatagaagaaagacagaccggtgttgtcaaagaagacaaagtggatgtcgaa
atttccttgcctattaatgcatacttgcctgaaacatacattcaagatggttatcaaaaa
atccaaatgtataaacgcgtaaaagcgattacggacgatgaggattacttggagctcgtc
gacgagatgatcgaccgctttggcgatatgccatttgaagctgacctattgctacgcgtt
ggacgcatgaaggcttggggacgtgatgctggcgtggtctccatcaaaaatgtgcaaggt
atagtagaaattcgtttatctgaagaaggaacagctcgtgctgacggcgcaaaactgatg
gaacgctcgttgaagtttggccatgcggttggactaacgattgataacggacaaattact
gtaaccgtgaatgaaaagaagtccaatcagttcacagagttcgatatggttgaagatatg
gtacacacgatgcaggaaacggcaaaggaagttgaatcttcggatgccttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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