KEGG   Shewanella violacea: SVI_1248
Entry
SVI_1248          CDS       T01206                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
svo  Shewanella violacea
Pathway
svo03030  DNA replication
svo03430  Mismatch repair
svo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:svo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SVI_1248 (dnaE)
   03430 Mismatch repair
    SVI_1248 (dnaE)
   03440 Homologous recombination
    SVI_1248 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:svo03032]
    SVI_1248 (dnaE)
   03400 DNA repair and recombination proteins [BR:svo03400]
    SVI_1248 (dnaE)
Enzymes [BR:svo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SVI_1248 (dnaE)
DNA replication proteins [BR:svo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SVI_1248 (dnaE)
DNA repair and recombination proteins [BR:svo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SVI_1248 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2
Other DBs
NCBI-ProteinID: BAJ01219
UniProt: D4ZHS0
Position
1455732..1459205
AA seq 1157 aa
MSDPSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHGA
GVKPIIGADFWVRVPGFDKDLCSVTVIAMDNDGYLNLTLLISDAYLRGHINDRAVIDQEW
LIKYSNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYLELLRTGRPDEET
YLHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPKKYSDQQYF
KSSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYFLPNFPTGELSIEDFLVKVSEDGL
ENRLEFLFPDPEVRAQKRPAYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDQDIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITDFAPIYCDSEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKEPVRIESIPLDDKKSFKLL
QRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFNVDEEGKIVYGIGAIKG
VGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDSLGPHRAAMMAT
LPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQQFVQCTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARNHFAS
ALEVDIDSDSIDETWLDSFKQVVEPWKKGSVPIIVNYAQPQAKAQLKLGDNWRVNPTDEL
MLALETLTGAGKVRILF
NT seq 3474 nt   +upstreamnt  +downstreamnt
atgtctgatcccagttttgtgcatctacgcgttcacagcgattattccatgtctgatggc
ctggccaaagtgaagcctatcttagctaaggtgacagaacttggcatgccagcagtcgcg
ttaaccgatcagaccaacctatgtgggctagttaaattttatggtgcctgccatggtgcg
ggtgttaagcccatcataggtgccgatttttgggtaagagttcccgggttcgataaagat
ttatgttcggtcactgtgatagccatggataatgacggatatttgaatttaactttatta
atcagtgacgcttacctgaggggtcatataaacgatagggctgttatcgatcaagagtgg
ctgattaaatacagtaatggattactactactctcgggcggacgtcatggagatgtcggt
agggcgctgttaaagggtaataagccgcaagtcgattcattagtcgaattttatcagact
cattttcccgatcgttactatctggaacttttacgtactggccgacccgatgaggagact
tatcttcatctggctgtggagctggcacaagagaaaggtttgcctgtggtggcaaccaat
caggtggtgtttaatagtccagaattcttcgatgcccatgagatccgtgtcgctatttca
gacggtttcactttagccgacccacgtcgtccgaagaaatacagtgatcaacagtatttt
aagagcagcgaagagatgtgtgcgctgtttgaagacattcccgaagccattgccaacaca
gtagagatagccaagcgctgtagtgtgacagtgcgtttgggtgagtattttctgcctaac
ttcccaacgggtgaactaagcatcgaagatttcctggtgaaggtgtcggaagatggcttg
gagaatcgcttagaatttctatttcccgatccagaggtcagggcacagaagcgtcctgca
tacgatgaacgtctggatatagaacttaaggtgattaaccagatgggcttccctggctac
tttctcatcgtgatggaatttattcagtggggaaaagatcaggatattccaatcggtccg
ggtcgtggatctggagcagggtccttagtggcctatgccctcaagatcaccgatctcgac
ccgctggaatatgaactcctgttcgagcgtttcctcaacccagaacgtgtttctatgccg
gatttcgatatcgatttctgcatggacagacgagatgaagttatcgaccatgtagccgag
ctctatggccgtgatgctgtttctcagatcatcaccttcggtaccatggctgctaaggcc
gttatacgagatgtgggccgagtattgggccatccctatggctttgttgaccgtatctct
aagatggtgccagccgagcctggtatgactctggctaaagccttcgaagtagagcctgct
ctacaggagtcttacgatggtgatgaggaagtaaaagatcttatcgacatgtgtcgaata
ttagaaggtgtcacgcgtaacgcgggtaagcatgcggggggcgtggtgatatcgccgacc
aaaattaccgattttgctcccatctactgtgactccgaagggaaaaacccggttactcaa
ttcgataagaatgatgttgagactgcgggcctggtcaagtttgacttcttgggactgaga
accttgaccatcatcgactgggcattgcagatgatcaatcccaaacgtaaggcgttgggt
aaagagcctgtgcgtatcgagtcgatacccctggatgataaaaagagtttcaagctgcta
cagcgttacgagactacggcggtattccagttggaatctcgtggtatgaaagatttgatc
aagcgtctgcaaccggatagcttcgaagatatgattgctctggtggccttgttccgtccg
ggtccacttcagtccggcatggtagataactttattgaacgtaagcacggtcgagaagaa
gtctcttttcccgatgccgagtatcaacatgagtctctcaagtgggtactcgaacccacc
tacggcattattctctatcaagagcaggtgatgcagatagcccaggtgctcgcgggctac
tcacttggtggcgcggatatgctgcgtcgagccatgggtaagaagaaacccgaagagatg
gccaagcagcgtggtaccttcgaagagggcgccatcaataatggtatcgacggcgaactg
tcgatgaaaattttcgatctggtggagaaatttgccggttacggatttaacaagtctcac
tcggcagcctatgcactggtttcctatcagacactctggctaaagacccattatccggcc
gagtttatggcggcggtaatgtctgccgatatggataataccgataagatagtcatcttg
gtggatgaatgtgaacgtatgggtcaacctctgttgccaccggatgttaacaagggtttg
ctaaaattcaatgtcgatgaagagggcaagattgtctacggtatcggcgccatcaaggga
gtgggtgatggcccagttgagtcgatactggccgcgcgtaaggatggtcctttcaaagat
ctgttcgatttctgtgcgcgggtagaccttaaaaagttaaataagcgcatcatggaaaaa
cttatctgcgccggagccttggatagcttagggcctcatcgcgccgccatgatggcgact
ttacccgcagccgtacgcgccgcggatcaaaatgccaaggctgaggccatcggccagcat
gatatgtttggtttgctcaatagcgataccgaagatatcaagcaacaatttgtgcagtgt
actccttggcccgataagatctggcttgagggggagcgtgaaaccttaggtctttacctc
acaggtcacccgataaatcagtatctcaaagagctgaagcattacacatcgggtcgactc
aaggatgtacatccaacagagcgtggcaagacaatgaaagccgccggcctggttattgcg
acgcgagtgatgatgaccaagcgtgggtctaagatggggctagtgactctggacgataag
agtgctcgcctggaggtgatgctatttaccgaggcatttgagaagtttaaccacctactg
gaaaaagatcgcatcttgattatcgaaggtgaggtcagtttcgatgatttctccggtggc
aatcgtatgactgcccgaaacatcatagatatgggagaggcgcgtaatcatttcgccagt
gccctagaggttgatatcgacagtgactcaattgatgaaacttggttagatagtttcaag
caagtggtggagccgtggaaaaagggctcagtacccatcatagtcaattatgcccaacca
caggctaaggcgcagcttaagctaggggataactggagagtgaatccgacagatgagctc
atgctggcgctggaaaccttaaccggagctggcaaggtgaggatcttgttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system