KEGG   Sphingobium sp. YBL2: TZ53_12840
Entry
TZ53_12840        CDS       T03855                                 
Name
(GenBank) ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
syb  Sphingobium sp. YBL2
Pathway
syb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TZ53_12840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syb03019]
    TZ53_12840
   03009 Ribosome biogenesis [BR:syb03009]
    TZ53_12840
Enzymes [BR:syb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     TZ53_12840
Messenger RNA biogenesis [BR:syb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TZ53_12840
Ribosome biogenesis [BR:syb03009]
 Prokaryotic type
  rRNA processing factors
   TZ53_12840
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG Anti-TRAP
Other DBs
NCBI-ProteinID: AJR24479
UniProt: A0A0C5X5M5
Position
complement(2804897..2807593)
AA seq 898 aa
MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRAEVEDDEDVAADGGLE
VVEATHHHDDEDHGEETAENGNGGDNGRGRGRRGKGDDAADELRRKRMALRRRYKIQDVI
KRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKS
IIAEMNLPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSDL
IKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQ
LAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQL
RLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRT
GVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGSLITLRASQEAAFYVLNN
KRRELDEIEQRYGVRIAILPDGEVEGARMSVEASGPRPERVVDYTPIAEEDDDLDVIEEL
DEEEIEEVDAAQEERAERGEDRGDDREGGGRRRRRRRRRRGGQRDEHRAESETQGEAGED
ADSAEEEAEIEGETEAVLAEAAAEAEGEGRRRGRRGRRGGRRRREAGEEAVSEGSVASEE
AVEAEVVQEPVAEATPEAPAEEEAPKTRRRPRARKAKESAAPAAEAVEAVAVEAPVETPV
EAVPEAAAAEEAPAKPKRTRRKKADPVAEEAAAAEAAPAAPAAEEAPAKPKRTRRKKADP
VVEEAVAAETASSVETPVEAVPSDEAAETLIVNGEAEAADEGDDGAPRRGWWQRTFGQ
NT seq 2697 nt   +upstreamnt  +downstreamnt
atgacaatgcgtatgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtc
aaaggtaaccggatcgaggagttcgacttcgaatcggccgagcacaagcagctcaagggc
aatatctacctcgccaaggtcactcgcgtagaaccgtcgttgcaggcggccttcgtcgat
tatggcggcaatcggcacggtttcctggctttcagcgaaatccaccccgactattatcag
atcccccgcgaggaccgcgaagcgctgctgcgcgaggaacgcgcccatgcggaggaagag
gccgcgctgcgcgccgaggtcgaggatgacgaggatgtcgccgccgacggcgggctggaa
gtcgtcgaggccacccatcatcatgacgatgaggatcatggcgaggaaacggccgagaac
ggcaatggcggcgataacggcaggggccgcggccgtcgcggcaagggcgacgatgccgcc
gacgaactgcgccgcaagcgcatggcgctgcgccgccgctacaagattcaggacgtcatc
aagcgccgccaggtgctgctggtgcaggtcgtcaaggaggagcgcggcaacaagggtgcg
gcgctgaccacttacctgtcgcttgccggccgttattgcgtgctgatgcccaacaccagc
catggcgggggcatttcgcgcaagatttcgaacgccgccgaccgcaagcggctgaagtcg
atcatcgcggagatgaacctgccctccaccatgggctgcatcgtccgcaccgcgggcctc
cagcgcaccaagccggagatcaagcgcgacttcgactatctggcgcgcctgtgggacgaa
atccgcgagaagacgctgaagtcggacgcgcccgcgctgatccacaatgacagcgacctc
atcaagcgggcgatccgcgacatctacaacaaggatattgaagaggtcatcgtcgagggc
gaatatggctataaggcggccaaggacttcatgaagctgctgatgcccagccatgcgcgc
cgggtgaagcaatatgccgacgcggtgtcgctgttccagcgcgccagcgtcgaggaccag
ctcgcggcgatgtacaatcccgtcgttcagctcaagtccggcggctatctggtcatcaat
ccgaccgaggcgctggtttcgatcgacatcaactcgggccggtcgacccgcgagcatggc
atcgagcagaccgctgtcgccaccaatctggaagcggcgcgggagattgcacgtcagttg
cgcctgcgcgacatggcgggcctggtcgtcatcgacttcatcgacatggagatgaactcc
aacatccgcaaggtcgagaaggcgatgaaggaggcgctgaaggacgatcgcgcccgtatc
caggtcggccggatctccggcttcggcctcatggaaatgagccgccagcggctgcgcacc
ggcgtgctggaagcatcgacccgccagtgcccgcattgcgaaggcacggggctggtccgc
accgcttcgtcggccggcctcagcgcgctgcgcatgctggaagaggaggcggcgcgcggt
cgcggcagcctgatcacgctgcgggcgagccaggaagcggccttctacgtgctcaacaac
aagcgccgggagctggacgagatcgagcagcgctatggcgtgcgcatcgcgatcctgccc
gatggcgaggtcgaaggcgcgcgcatgtcggtcgaggccagcgggccgcgtccggagcgg
gtggtggactatactccgatcgcggaagaggatgacgatctcgacgtcatcgaggaactg
gacgaggaagagatcgaggaagtcgacgccgcgcaggaggaacgcgccgagcggggcgag
gatcgcggtgatgatcgggaaggaggcggccgtcgccgtcgccgccgtcgtcgccgtcgc
ggcggtcagcgcgacgagcatcgcgccgagtcggagacccaaggcgaggctggcgaggac
gccgacagcgctgaagaggaagccgagatcgagggcgagaccgaggctgttctggccgaa
gccgccgccgaagcggagggcgaaggccgtcgccgtggccgtcggggccgccggggcgga
cgccgccgccgcgaagccggcgaggaagcggtgagcgaaggctcggttgcaagcgaggaa
gccgtcgaggccgaagtcgttcaggagcccgtggcggaagcaacgcccgaagcccctgcc
gaggaagaagcgcccaagacccgccgccgcccccgtgcacgcaaggcgaaggaaagcgcc
gcgcctgccgccgaagcggtggaagccgttgcggtcgaagctcctgtggaaacgcccgtc
gaagccgtgccggaagccgccgccgccgaagaggcgccggccaagcccaagcgcacgcgc
cgcaagaaggccgatccggtagcggaggaagccgctgctgccgaggctgcaccggcagcg
cccgccgccgaagaggcgccggccaagcccaagcgcacgcgtcgcaagaaggccgatccg
gtggtcgaggaagccgttgccgccgagaccgcgtcatccgttgaaacgcccgtcgaggcc
gttccatccgatgaggctgcggagacgctcatcgtgaacggagaagccgaagcggcagac
gaaggtgacgatggcgcgccgcgccgcggctggtggcagcgcaccttcggccagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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