KEGG   Synechococcus sp. CC9605: Syncc9605_0069
Entry
Syncc9605_0069    CDS       T00292                                 
Name
(GenBank) conserved hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
syd  Synechococcus sp. CC9605
Pathway
syd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Syncc9605_0069
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syd03019]
    Syncc9605_0069
Messenger RNA biogenesis [BR:syd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Syncc9605_0069
SSDB
Motif
Pfam: Lactamase_B RMMBL RNase_J_C Lactamase_B_2
Other DBs
NCBI-ProteinID: ABB33848
CyanoBase: Syncc9605_0069
Position
66701..68740
AA seq 679 aa
MANNARSSKGQEPCLRVIPLGGLHEIGKNTCVFEYGDDLMLVDAGLAFPSDGMHGVNVVL
PDTSFLRENQKRIRGMIVTHGHEDHIGGIAHHLKHFNIPVIYGPRLALSMLTGKMDEAGV
RDRTTLQTVAPRDVVKVGQHFSVEFIRNTHSMADSFSLAISTPVGTVIFTGDFKFDHTPV
DGENFDMARLAHHGDKGVLCLFSDSTNSEVPGFCPPERSVFPNLDRHIANAEGRVIVTTF
ASSIHRVSMILELALKNGRKVGLLGRSMLNVIAKARELGYMRAPDELFVPIKQINDVPDR
ETLLLMTGSQGEPLAALSRISRGEHPQVKVKTTDTIIFSASPIPGNTISVVNTIDKLMML
GAKVVYGKGEGIHVSGHGFQEDQKLMLALTRPKFFVPVHGEHRMLVQHSRTGHAMGVPVD
NTLIIDNGDVVELTPDSIRKGNAVKAGIELLDQSRNGIVDARVLKERQQLAEDGVVTILA
AISTDGAMVAPPRVNLRGVVTTADARKMSLWVEREIKWVLENRWKQLCRNTGGKAPEVDW
MGVQREVEVGLGRRMRRELQVEPLILCLVQPAPGGTPVYKGRADAEPDDRPAPRGRGGRG
GGSPYGRRNGGGGGTPAPVRNNQGNGRSGSATPAPVRAAAATAVVEKVAPQPVAEKAAPA
SPEPEMPAGRTRRRRSAAS
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggccaacaacgcgagatccagcaagggtcaggagccctgccttcgggtgatccccctg
ggcggtctgcacgagatcggtaagaacacctgtgtgttcgagtacggcgatgacctgatg
ctggtggatgccggtctggccttccctagcgacggcatgcacggggtgaatgtggtgctc
cccgacaccagtttccttcgcgagaaccagaagcggatccgcggcatgatcgtcacccat
ggtcatgaagaccacatcggtggcatcgcccatcacctcaagcacttcaacattccggtg
atctacgggccgcggctggccctctcgatgctcaccggcaagatggatgaggccggtgtt
cgcgaccgcaccaccctgcagaccgtcgctccgcgcgatgtggtgaaggtgggtcagcac
ttctccgtggagttcatccgcaacacccactcgatggccgacagcttctcgctggccatc
tccacaccggtgggaacggtgatcttcacgggggatttcaagttcgaccacaccccggtc
gacggcgaaaacttcgacatggcccgcctcgcccaccacggtgacaagggagttctctgt
ctgttcagcgattcaaccaactccgaggttcctggcttctgcccgccggaacgctcggtg
ttccccaacctagatcgccacatcgccaatgcagaagggcgggtgatcgtcaccaccttc
gccagctcgattcatcgcgtgtcgatgattttggagctggccctgaagaacggccgcaag
gtggggctgctgggccgctcgatgctcaatgtgatcgccaaggcgcgggaactgggctac
atgcgcgcgccggatgaattgtttgtgccgatcaaacagatcaacgatgtgcccgatcgt
gaaacgctgctgctgatgaccggcagccagggtgagccgctggccgccctgagccgcatc
tcccgtggtgagcatccccaggtgaaggtgaagaccaccgacacgatcatcttctcggcc
agcccgattccgggaaacacgatttccgtggtgaacaccatcgacaagctgatgatgctg
ggcgccaaggtcgtttacggcaagggtgaaggcatccatgtctccggccatggcttccag
gaagaccagaaactgatgctggccctcaccaggcccaagttcttcgtgccggtgcacggt
gagcaccggatgctggttcagcactcccgcaccggtcatgcgatgggggtcccggtcgac
aacaccctgatcatcgacaacggtgatgtggtggagctcaccccggattcgatccgcaag
ggcaatgccgtgaaggcgggcatcgagctgctggatcaatcccgcaacggcatcgtcgat
gctcgggtgctgaaggaacgccagcagctggcggaagatggcgtggtgacgatccttgcc
gccattagcaccgatggcgccatggtggctccgccgcgggtgaacctgcgcggtgtggtc
accacagccgatgcccgcaagatgtcgttgtgggtggagcgcgaaatcaagtgggtgctt
gagaatcgctggaagcagctctgccgcaacaccggtggcaaggcacccgaggtggactgg
atgggtgtgcagcgcgaagtggaggtaggccttggccgccggatgcgccgtgaacttcag
gtggagccgctgatcctgtgtctggttcagccggctcctggtggcacaccggtttacaag
ggccgtgctgatgctgagcccgatgaccgtccagccccccgcggtcgcgggggtcgtggc
ggtggctctccctatggccgtcgcaacggcggtggcggtggaacccccgctccggtgcga
aacaaccagggcaatggtcggtctggctcggcaacaccggcccccgttcgtgccgctgcg
gcaaccgcagtggtggagaaagtggctcctcaaccggtggctgaaaaggcagccccagct
tccccggagccggagatgcctgcaggccgcacccgtcgtcgtcgttcagcggccagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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