KEGG   Synechococcus sp. WH 8109: Syncc8109_0979
Entry
Syncc8109_0979    CDS       T03783                                 
Name
(GenBank) DEAD/DEAH box helicase-like protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
syh  Synechococcus sp. WH 8109
Pathway
syh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Syncc8109_0979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syh03019]
    Syncc8109_0979
   03009 Ribosome biogenesis [BR:syh03009]
    Syncc8109_0979
Enzymes [BR:syh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Syncc8109_0979
Messenger RNA biogenesis [BR:syh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Syncc8109_0979
Ribosome biogenesis [BR:syh03009]
 Prokaryotic type
  rRNA helicases
   Syncc8109_0979
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22 B12-binding DEDD_Tnp_IS110
Other DBs
NCBI-ProteinID: AHF63353
UniProt: W0GWI1
Position
762868..764691
AA seq 607 aa
MSLISEINQAKPPFMTEQQQQRDDSACAVDLSASDLPASNSNAEVFTTTITSAEPESGFA
GFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE
SGQKTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVDVV
VGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSAT
MPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVI
IFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGL
DVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLERATGQPIE
AMEVPGNTAINQGRLDRLRKRLSDAAQSQRPDADEAALLQELMQRVATELELTPDQLAMA
ALNLAIGPDALLRKGDDDWIQNTRRNDRDRDRHSGDRRERRERPARAPEENMQRYRVEVG
HRDRVKPGNLVGAIAGETGLQGRMIGRIQIFDNHSLVDLPKGMPEDVFNSLQRLRVMNRE
LQISKAA
NT seq 1824 nt   +upstreamnt  +downstreamnt
gtgagcctgatttcagagatcaatcaggcgaagccacctttcatgactgaacagcaacag
cagcgcgacgattccgcctgcgcagtggatctttctgcatccgacctgccggcatccaac
tccaatgctgaggtgttcaccaccaccatcacatcggctgagccggaatcaggtttcgcc
ggttttggtttcagtgaggctctgctccgcaccctggcggacaagggatacagcgaacct
tcccccattcagaaggcggccttccccgagctgatgctcggccgcgatctggtgggtcag
gcccagaccggcaccggcaaaacagcagcgtttgcccttccgttgctcgagcgcctcgag
agcggccagaaaacaccccaggccctcgtgctcgcccccacacgggagctggcgatgcag
gtggccgaatcgttcaaggcctattccgccggccatccccatctgaaggtgctggcggtg
tacggcggcacggatttccgctctcagatcagtgccctcaggcgcggagttgatgtggtg
gtggggacccccggccgggtgatggaccacatgcgtcagggcacactcgacaccagcggt
ctgcgcagcctggtgctcgatgaagcggacgaaatgctccgcatgggcttcatcgatgat
gtggagtggattctcgaccagcttccggagcagcgacaggtggtgctgttctccgcgacg
atgcctcctgagatccgtcgcctgtccaagcgttatctcaaggatccggccgaggtcacg
atccgcaccaaggatcaggaaggcaagcggatccgccagcgttcgatcacggtgccgatg
ccgcacaagcttgaggccctgcagcgggttctcgacgcctgtgggggtgagggtgtgatc
atctttgctcgaaccaaggcgatcaccctgaccgtggccgaaacccttgaggccggtggc
catcaggtggcggtgctcaatggcgacgttccccagaaccaacgggagcgcaccgtggag
aggctgcgcagtggatcggtcgacatccttgtggccaccgacgttgcagcacggggtctc
gatgtggagcgcatcggcctggtgatcaactacgacatgccgttcgacagcgaggcctac
gtgcaccgcatcggccggacgggccgggctggacgcaccggagaagcggttctgttcgtg
actccacgggaacgccgtttcatccgcaacctcgagcgggccacgggccaaccgattgaa
gcgatggaggtgcccggcaacacagccatcaaccagggacggctggaccgcctgcgcaag
cgtttgagtgatgcggctcaatcccaacgccctgacgccgatgaagcggccttgctccag
gaattgatgcagcgggtggccacggaacttgagctcacccccgaccagctggccatggcg
gcactcaacctggccatcggccccgatgcgctgttgcgtaagggcgacgacgactggatt
cagaacacccgtcgcaatgaccgcgaccgcgatcgccattcaggggaccgccgtgagcgg
cgcgagcgtccggcccgggctcctgaggagaacatgcagcgctaccgagttgaggtaggt
caccgcgatcgggtcaagccgggcaacctggtgggtgccatcgccggcgagaccggtctg
cagggcaggatgatcggtcgcattcagatttttgacaatcacagcctggtggatcttccg
aagggcatgccggaagatgtgttcaacagccttcaacgcctgcgcgtgatgaaccgcgaa
ctgcaaatcagcaaggccgcttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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