KEGG   Synechocystis sp. PCC 6803: sll1689
Entry
sll1689           CDS       T00004                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
syn  Synechocystis sp. PCC 6803
Brite
KEGG Orthology (KO) [BR:syn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:syn03021]
    sll1689 (rpoD)
Transcription machinery [BR:syn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     sll1689 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2
Other DBs
NCBI-ProteinID: BAA17757
CyanoBase: sll1689
UniProt: P73710
Position
complement(1301671..1302780)
AA seq 369 aa
MSDMSSLSTPNTSAVDQWQALDGLADGQAIANDDPPAIEVTLGDGQQGSFNKAVSEDTVG
AFFKEMARYPLLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVR
QFEIWLYQLRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDK
GYKFSTYAYWWIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGEL
AAALDITPAQLRQLLQLRRQSLSLNHRVGKGEDTELVDLLEDQQLQLPEDLMNESMLRRE
IVEVLAEVLTEREMEVICLRYGIASHQSYTLEEVGNMFNLSRERVRQIQSKAMRKLRRPQ
VARRLKGWL
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagcgatatgtcttccctctccacccccaacaccagtgccgttgaccaatggcaggct
ttggatggcctcgctgatggccaggcgatcgccaatgatgaccctccggcgatcgaagtc
accctgggagatggccaacaaggaagttttaataaagcagtaagtgaagacactgtgggg
gctttttttaaagaaatggcccgctatcccctcctgagtgccgccgaagaagtggaattg
gctagacaaatccgattgttggtcagcgcagaagatgttagacaacaactcacccaacaa
ctggaacgaacgccttccctccaggagtgggggcaagccctagaatttccccaggtcaga
caatttgagatttggctttatcaactgcgggctgccaaacgacggatgatccgctccaat
ctccgcctagtggtttccattgccaagcgttacctcaaccgtggtgttcccttcctcgac
ctgatccaagaaggggcgatcggtctcaaccgagccgcagaaaagtttgatcccgataaa
ggttataaattttccacctatgcctactggtggatccgccaggccatcacccgcaccatt
gccaatgacgctcgcaccattcgtttgcccatccatgtggtggaaaagctcaacaaaatc
aagaaagcccaacgcagtctcaagcaggaattgaagcgcaatcccaacgaaggggaattg
gccgctgctttggacattacccctgcccaactaagacaattactgcaattgcgtcgtcag
tccctgtccttaaaccatcgggtaggcaaaggggaagacaccgagttggtagatctacta
gaagatcaacaactgcagttgccggaggatttgatgaatgaatccatgttgcggcgggaa
attgtcgaagtattggccgaggtactaacggaacgggaaatggaagtgatttgtctgcgc
tacggcattgccagccaccaaagttacacccttgaggaagtgggcaatatgtttaatctt
tcccgggaaagggttagacaaatccaaagcaaagccatgcggaaactccgtcgtccccaa
gtggcccgccgcctcaaaggttggttatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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