KEGG   Synechococcus sp. PCC 6312: Syn6312_1246
Entry
Syn6312_1246      CDS       T02370                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
syne  Synechococcus sp. PCC 6312
Pathway
syne03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:syne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Syn6312_1246
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:syne03021]
    Syn6312_1246
   03400 DNA repair and recombination proteins [BR:syne03400]
    Syn6312_1246
Enzymes [BR:syne01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Syn6312_1246
Transcription machinery [BR:syne03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Syn6312_1246
DNA repair and recombination proteins [BR:syne03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Syn6312_1246
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AFY60428
UniProt: K9RSI2
Position
complement(1209788..1213102)
AA seq 1104 aa
MASNQIYTPPAFTLPDLVEIQRASFRWFLEEGLIEELASFSPITDYTGKIELHFLAQNYK
LKQPKYSVDEAKRRDATYSMQMYVPTRLINKENGNIIDQDVFIGDLPLMTDRGTFIINGA
ERVIVNQIVRSPGVYYKSETDKNGRRSYNASLIPNRGAWLKFETDKNDLIWVRIDKTRKL
SAHVLLKALGLSDGEIMERMRHPEYYQKTIEKEGKFTEEDALLELYRKLRPGEPPTVSGG
QQLLESRFFDPKRYDLGRVGRYKLNKKLQLTIPDTTRVLTPEDILAAIDYLINLEFDLGS
VDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDTDNLSPASLVNPKPLVAA
IKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPI
ETPEGPNAGLIGSLATHARVNEYGFIETPFYPVKDGKVLKEQAPLYMTADEEDDKRVAPG
DIPTDEQGYILGEVVPVRYRQDFTTTTPDQVDFVAVSPVQIISVATSLIPFLEHDDANRA
LMGSNMQRQAVPLLRSTRPLVGTGLESQAARDSGMVILSRTDGEVTYVAANLIKVRSPQG
QEISYYLQKYHRSNQDTCLNQRPLVFAGDQVKAGQVIADGSATEGGELALGQNIMVAYMP
WEGYNYEDAILISERLVQEDIYTSIHVEKYEIEARQTKLGPEEITREVPNVSEDSLRQLN
ETGIIRVGAYVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGERG
RVVDVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPAEDMP
FLPDGTPVDIVLNPLGVPSRMNVGQVYECLLGWAGQNLGMRFKITPFDEMHGLEKSRETV
HEKLRQAREATGHDWVFDPENPGKLQVFDGRTGEPFDRPITVGMAYMLKLVHLVDDKIHA
RSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNEAL
NAIVKGQSIPRPGTPESFKVLMRELQSLCLDISVKKVATAGDDDFTTVKVDPEVDLMADV
MQRRAPARPTYESLNAEDLDESEV
NT seq 3315 nt   +upstreamnt  +downstreamnt
atggctagtaatcaaatttacacgccacccgcttttactcttccagaccttgtcgagatt
cagcgggccagttttcgttggtttttagaagaaggattgattgaagaattagccagcttt
tcacctattactgactataccggcaaaattgagctccatttcctcgcccagaattacaag
ctaaagcagccgaaatactcggtagatgaagccaagcggcgggatgccacctattcaatg
caaatgtatgttccgactcggctgattaacaaggaaaacggcaacatcattgatcaggat
gtctttattggcgatctgcctttgatgaccgaccgggggactttcattatcaacggggcg
gaacgggttattgttaaccaaattgtccgtagtcctggggtctattacaaatcggaaacc
gataaaaatggtcgccgcagttacaatgccagcttgattcccaatcgcggggcctggttg
aagtttgagaccgacaaaaatgatttgatttgggttcggattgataagactcggaaactc
tcagcccacgttcttctcaaggccttgggactcagtgatggcgagattatggagcggatg
cgccaccctgagtactatcaaaaaactattgagaaagaaggcaagtttactgaagaagat
gctcttttagaattgtaccggaagctacggccgggtgagcctcccacggtttcgggtggg
cagcaacttttagaatctcggttctttgatcccaaacgctatgacctggggcgggtagga
cgttacaaactcaataaaaagctgcaactgacgattcccgataccacccgtgttttaacc
ccagaagatattctcgctgccattgactacctcatcaacttggaatttgatctgggtagt
gtggatgacattgaccatttggggaatcgtcgggtacggtctgtgggtgaattgctacag
aaccaagtccgggtaggtctcaatcgccttgagcggattattcgggaacggatgaccgtt
tcagatacggacaacctcagtccagcttccttagtgaaccccaaacccttagttgcggcg
attaaggaatttttcggctcaagccagttatcccaattcatggatcaaacgaatcccttg
gcagaactgacccataaacgccgcttaagtgccttagggcctgggggtttgactcgggaa
cgggctgggtttgctgtccgggatattcaccccagccactatggacgaatttgtcccatt
gaaaccccagaggggcccaatgccgggttgattggttccttggcaactcatgcccgcgtt
aatgagtatggctttattgaaacgcctttttatccagtcaaagatggtaaagttctcaaa
gaacaggccccgctttacatgaccgccgatgaagaagatgataagcgggttgcaccgggt
gatattcccacggatgaacagggctatattctcggtgaagttgttcccgtccgttatcgg
caagatttcacgactacaaccccggatcaggtggatttcgtggcggtgtcgccggttcag
attatttctgtggcgacttcgttaattccattcctggaacacgatgatgcgaaccgggcc
ctgatgggttcaaacatgcaacgccaggccgtgccactgttacgctcgacccgaccactc
gtgggaactggacttgaatcccaggccgcccgcgattctgggatggttatccttagtcgg
actgacggggaagtgacctatgtggccgccaacttgattaaagttcgctctccccaaggc
caggaaattagctactatttgcaaaaataccatcgttccaaccaagatacctgtctgaat
caacgcccactggtgtttgctggtgatcaggtgaaggccgggcaggtgattgccgatggt
tcagcgactgaagggggtgaactggcccttggacaaaatatcatggtcgcctatatgccc
tgggaaggctataactatgaagatgcaattttaattagcgagcggttggtccaagaggat
atctacacctccattcacgtcgagaagtacgaaattgaagcccgccaaaccaagctcggg
ccggaagaaattacccgagaagttcccaacgtctctgaggattctttacgacaactcaac
gagaccggcattatccgtgtgggggcttacgtcgagtccggtgatattctggttgggaaa
gttaccccgaaaggggagtctgatcagccaccggaagaaaaacttttgcgagccatcttt
ggggaaaaagcccgtgatgtgcgggataactccttacgagttcctaacggtgagcggggt
cgggtcgtggatgtgcgggtctttacccgtgaacaaggggatgagttaccaccgggggcc
aatatggtcgtgcgggtttatgtggctcaaaaacggaaaatccaagtcggcgataaaatg
gccgggcggcatgggaataagggaattatttcccggattctcccggctgaggatatgccc
tttttacccgatggcacgcccgttgacattgtcctcaatcctctgggtgtcccctcccgg
atgaatgttggccaggtctacgaatgtcttttgggctgggctggccaaaatctggggatg
cgcttcaagattacgccttttgatgaaatgcatggcctggagaagtctcgagaaacagtc
cacgaaaaactgcgccaggcccgggaagcaacgggtcatgattgggtctttgatcccgaa
aaccccggtaagctccaagtctttgacggccgcacgggggaaccttttgaccgaccaatt
acggttggaatggcctatatgctgaaactggttcacttggtggatgacaagattcatgct
cgctctaccggcccctactctttggtgactcagcagcctctaggcggaaaagcccagcag
ggtggtcagcggtttggagaaatggaagtctgggccttagaagcttatggggccgcctat
attctccaagaactgcttaccgttaaatctgacgatatgcaggggcggaatgaggctctc
aatgccattgttaaggggcaatctatccccaggcctgggacaccggaatccttcaaggtg
ctaatgcgagaactgcaatccctctgtttggatatttccgtcaagaaagtggcgactgct
ggagatgatgactttaccactgtcaaagttgatcctgaagtcgacctcatggctgatgtg
atgcaacgtcgggccccagcacggccaacttatgagtccttgaatgccgaagatttagat
gaaagcgaggtctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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