KEGG   Synechocystis sp. PCC 6803: MYO_126190
Entry
MYO_126190        CDS       T02468                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
syz  Synechocystis sp. PCC 6803
Pathway
syz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MYO_126190 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syz03019]
    MYO_126190 (deaD)
   03009 Ribosome biogenesis [BR:syz03009]
    MYO_126190 (deaD)
Enzymes [BR:syz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     MYO_126190 (deaD)
Messenger RNA biogenesis [BR:syz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     MYO_126190 (deaD)
Ribosome biogenesis [BR:syz03009]
 Prokaryotic type
  rRNA helicases
   MYO_126190 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 HEM4 AAA_19 Flavi_DEAD
Other DBs
NCBI-GeneID: 14618043
NCBI-ProteinID: AGF52848
Position
2884912..2886390
AA seq 492 aa
MTNTLTSTFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAA
FALPLMDRIDPEGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRS
LERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTR
QTACFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPIL
EMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVV
ATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSI
ENRLKQQIEVCTIPNRSQVEAKRIEKLQEQLKEALTGERMASFLPLVRELSDEYDAQAIA
AAALQMIYDQSCPHWMKSDWEVPEVDFNKPVLRRGRNAGGGQNKSGGGYQGKPGKPRRSS
GGRRPAYSDRQQ
NT seq 1479 nt   +upstreamnt  +downstreamnt
atgactaatactttgactagtaccttcgctgaccttggtctttctgaaaaacgttgtcaa
ctcttggccgacattggctttgaggctcccacccaaattcaaactgaagccattcccctg
cttttgagcggccgggacatgctggcccaatcccaaaccggcacggggaaaaccgccgcc
tttgccctacctttgatggaccgcattgacccagagggggacttgcaagccttaattttg
acccccacccgggaattggcccagcaggtggcggaagcaatgaaggacttttcccacgag
cgccgtctatttattttgaatgtgtacggtggtcaatccatcgagcggcaaattcgcagc
ctagaacggggtgtgcaaattgtggtgggcacccctggacgggtgattgacctaattgac
cgcaaaaaacttaaattagaaaccatccaatgggtggtgctggatgaagcggacgaaatg
ctgagcatgggcttcattgacgatgtgaaaaccattctgcgtaaaactccccccaccagg
cagaccgcttgtttttctgccaccatgccccgggaaatcaaagaattggtcaaccaattt
ttaaatgatcccgccctggtgaccgttaaacagacccaatccacccccacccgcattgag
cagcagctttatcacgtgccccgcggttggtctaaggctaaagcgctacaaccgattctg
gaaatggaagatcccgaatccgccattatttttgttcgtactaaacaaaccgccgcagac
ctcaccagtcgtttgcaagaagcgggccatagcgtggatgagtaccacggcaacctgagc
caatcccaacgggagcgtttggtgcaccgtttccgggatggcaaaattaagctggtggtg
gccacggacatcgccgcccggggtttagatgtgaataacctcagccatgtggtcaacttt
gatttacccgataacgctgaaacctacattcaccgcattggccgcaccggtcgggctggt
aagactggtaaggcgatcgccttggtggaacccattgaccgtcgtttactgcgatccatc
gaaaaccgtctgaaacaacaaattgaagtttgtaccattcctaaccgttcgcaggtggaa
gccaagcggattgaaaaactgcaggaacaactcaaggaagccctgaccggtgagcggatg
gcctccttccttcctttagtgcgggaattgagcgatgagtacgatgcccaggcgatcgcc
gctgctgctttacagatgatctatgaccagagctgtccccattggatgaaatccgattgg
gaagtgccggaagttgatttcaacaagcccgttctccgtcgtggccgcaatgctggcggt
ggccagaacaaaagtgggggtggttaccaaggtaaaccgggcaaaccccgtcgctccagc
ggtggccgtcgtcctgcctatagtgatcgccaacagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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