KEGG   Leadbettera azotonutricia: TREAZ_0569
Entry
TREAZ_0569        CDS       T01506                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
taz  Leadbettera azotonutricia
Pathway
taz03030  DNA replication
taz03410  Base excision repair
taz03420  Nucleotide excision repair
taz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:taz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TREAZ_0569 (ligA)
   03410 Base excision repair
    TREAZ_0569 (ligA)
   03420 Nucleotide excision repair
    TREAZ_0569 (ligA)
   03430 Mismatch repair
    TREAZ_0569 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:taz03032]
    TREAZ_0569 (ligA)
   03400 DNA repair and recombination proteins [BR:taz03400]
    TREAZ_0569 (ligA)
Enzymes [BR:taz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TREAZ_0569 (ligA)
DNA replication proteins [BR:taz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TREAZ_0569 (ligA)
DNA repair and recombination proteins [BR:taz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TREAZ_0569 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TREAZ_0569 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     TREAZ_0569 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TREAZ_0569 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_5 HHH_2 HHH_3 HHH PTCB-BRCT DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: AEF82006
UniProt: F5YBK8
Position
1904249..1906258
AA seq 669 aa
MKNDRIAALERLIKKYQDSYYNGEAEISDAEFDLLWDELRSLDPGNALLKKVGADGQGPD
PDGFPKARHLIPMGSQDKAANPEEFRSWAKKMGMETEKEGVKAETSLTPDLFGLTKIFLV
QFKLDGASLELQYEKGKLRAAVTRGDGVTGDEITHNALAMSGVVAELKSPFTGGVRGEVV
MPHEIWKKKYPDKANCRNAANGIMRRKDGMGCEDLKLVTYDAAATGDDAYFTDELEKIAW
LKKQGFETTDTKTFSDIEDIIAYRDEIAAKREKLPVDIDGLVIKDRATDMTDLRRARPEH
QIAFKFELETAYSILRQVEWSESGATYTPIGIVDPVRLAGTTVKRANLNNPDMIRAMGLK
IGSAVSVVKRGEIIPKIEGLAPEGALEEGEEKSEIEFPSKCISCGTDLIDGGTRLYCPNA
ACPKRLVHRVEKWVSVLGIMELGEKLLARMFAKGNVRQIGDLYTIEAAELAEFERMGEAS
AAKVVRHIRTKRELSLAAFVAGFDFEGVGETIMDKVAAAGIDTLEKLREASVADLAAVYG
LGDITAKTIADGVKECSAEMDRILGFNIIAIAPPPSSDSIPLKGLSFCFTGELASMKRNE
AEEKIKTLGGSAKSSVVKDLSFLVTNDTESGSAKNKKANDLGVPILDEEEFLALLKNPQL
AGEYRNKGH
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgaaaaacgatcgtattgccgctttggaacggctgattaaaaaataccaggactcttat
tataacggcgaggccgaaatttcggatgccgagttcgatctcctctgggacgaattaaga
tcccttgacccaggaaatgcccttcttaaaaaagtaggcgccgacgggcaggggcctgac
cccgacggctttcccaaggcacggcacctcattcccatgggaagccaggataaggccgca
aaccccgaagaattccgttcctgggcgaaaaaaatggggatggaaacggaaaaagagggg
gtaaaagcggaaacttcgttaacccctgatttattcgggttaacgaaaatatttcttgtc
cagttcaagctggacggcgccagccttgaattgcagtacgaaaagggaaagctcagggcg
gcggtaaccaggggcgacggtgttacaggggatgaaattacccataatgccctggctatg
tcgggggttgtggcggaattgaaaagcccctttaccggcggagtccggggcgaagtagtc
atgccccatgaaatctggaaaaagaaatacccggacaaagccaattgccgcaacgcggcc
aacggcatcatgcgccgcaaagacggcatgggctgcgaagatttaaaacttgtgacctac
gatgctgcggccaccggggacgacgcatattttaccgacgagcttgaaaaaatcgcctgg
cttaaaaaacagggctttgagacaacagataccaaaaccttttcggacatcgaggacatt
attgcctatcgtgatgaaatcgccgccaagcgggaaaagctgcctgtggacatagacggc
ctggtgattaaagacagggccacggacatgacagatctccgcagggcaaggcccgagcat
cagatcgcttttaaatttgaacttgaaacagcctacagcattttgcgccaagtggaatgg
agcgaatcaggcgcaacctacaccccaatagggattgtcgatcctgtgcgcctcgccggc
actaccgtaaaaagggccaacctcaataatcccgacatgatacgggccatgggcttaaaa
atcggctctgctgtctctgtggtcaagcggggcgaaatcatcccgaaaatagagggcctt
gcgcctgagggcgctttggaggaaggggaggaaaaatccgaaatcgaatttccctctaaa
tgcatctcatgcggcacagacttgatagacggcggaacaaggctgtactgccccaacgcg
gcctgccccaagcggctggtccacagggtggaaaaatgggtttctgttttggggatcatg
gaactgggcgaaaaactccttgcccggatgtttgcaaaagggaacgtaaggcagattggg
gatctctacaccatagaagcagcagagcttgcagaattcgagcgcatgggcgaagcgtcc
gccgcaaaggtggtgcgccatatccgaaccaaaagagagctatcccttgctgcctttgtg
gcgggcttcgattttgaaggggtaggcgaaacgatcatggacaaggtggcagccgccggc
atagatactctcgaaaaactccgggaagcctcggttgcggatctcgccgctgtctacggc
cttggggacatcaccgccaaaaccatagccgatggtgtaaaagaatgttctgccgaaatg
gacaggatattgggcttcaacatcattgctattgcgccccccccttcgtccgattcaatt
ccccttaaaggtctcagcttttgcttcaccggggagcttgcatccatgaagcgcaacgag
gcagaggaaaaaatcaaaaccctggggggatcggcaaaatcctcggtggtcaaggatctc
tctttcctggtgactaacgatactgaatcggggtcggccaaaaacaagaaagccaatgac
ttgggcgtgcccatactggacgaggaggaattcctcgctctattgaaaaacccgcagctt
gcaggggagtacagaaataaaggccattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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