KEGG   Trypanosoma brucei brucei: Tb09.211.0930
Entry
Tb09.211.0930     CDS       T01013                                 
Name
(RefSeq) polyadenylate-binding protein 1, putative
  KO
K13126  polyadenylate-binding protein
Organism
tbr  Trypanosoma brucei brucei
Pathway
tbr03015  mRNA surveillance pathway
tbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Tb09.211.0930
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tb09.211.0930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbr03019]
    Tb09.211.0930
   03041 Spliceosome [BR:tbr03041]
    Tb09.211.0930
Messenger RNA biogenesis [BR:tbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     Tb09.211.0930
   mRNA cycle factors
    Stress granule specific factors
     Tb09.211.0930
Spliceosome [BR:tbr03041]
 Complex C
  Other components
   Complex C specific factors
    Tb09.211.0930
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_3 RRM_7 DUF4523
Other DBs
NCBI-GeneID: 3660626
NCBI-ProteinID: XP_827237
UniProt: Q38E63
Position
9:complement(1427437..1429137)
AA seq 566 aa
MTIAAQGVPSGPSATKPLQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQR
SLGYGYVNYDDVNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEV
DSRELSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADK
AALYVANFIRRNARLAALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNG
RAFAFCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQS
LGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAAL
REMNGRMLNGKPLVVNIAQRRDQRLTMLKLQLQQRLQMMMHHMHPPPFGMPGHPLQRRNA
RSGGRGNRPHPRQQQPQPQPEPQPPLATTVPPAAAHSVMFTAPSMGFSAVPRTPQASPAI
APDTPPLPPISAEDLQQMSVDEQRAALGDRLYIKVHELAPDHAPKITGMFLEMNPKEALA
LLSNPKLMHEKVTEALCVLKVHASSA
NT seq 1701 nt   +upstreamnt  +downstreamnt
atgacaatcgctgcacagggggttccctccggtccctccgccacgaagccgctacaagtg
gcttcattgtacgttggcgacctcgatcctgctattaatgagccacagttggtggacatc
tttaaaccgtatggaactattctcaacgtccgcgtctgccgtgacatcatcacgcagcgc
tcattgggatacggttatgtgaactatgacgatgtgaatagcgcgtcgaaagccatggag
gaactcaatttcaagcgagtgggtgaaaagtgtatccgaatcatgtggcagcagcgtgac
ccagcactgcggtacagcggaagtggtaatatattcgtcaaaaaccttaaggaggaggta
gacagtcgggaattgagtttgatattcaagaagtttggtgagatcctttcctgcaaggtg
atggacgatgagagcgggaaaagtcgcggttacggctttgtccacttcaaggacgacgat
gcagccaaagccgccatcgagaaaatgaacggtgacaaggaacacgccgatgcggataag
gcagcactgtatgttgccaatttcattcgtcgtaatgcccgtcttgccgcacttgtggcg
aacttcacgaacgtgtacataaagcagctccttcccacagttgataaagacgttatcgaa
aaattcttttcgaagtttggcggcatcacgagcgcagcgatatgcaaagacaagaacggt
cgtgcattcgccttctgtaactttgaaaaacacgatgacgcagttaaagccattgaggcg
tcacatgatcaagaggtggaaggtgttacgcagcctggggagaagttgtacgtgcagcga
gctcaaccgagaagtgagcggcttattgcactccgccaaaaatacatgcagtgccagtca
cttggaaacaacttatacgtccgtaactttgacgctgagttcacggaaaaagacctcaat
gaactgttcaaagagtacggtgttattcgcagctgccgtgtgatgaccgatgccaatggc
ataagtcgcggtttcggctttgtaagtttcgaaaatgcggatcaggcaaacgccgcactc
cgtgaaatgaatggtcgtatgctgaacgggaaacctctcgttgtcaacattgcgcagcgc
cgtgaccagcgcctcaccatgctgaagttacagctccagcaacgcctgcaaatgatgatg
caccatatgcatcctcctccgttcggtatgccggggcatccactgcagagacgcaatgcc
cgcagtggcggccggggcaaccgtccgcacccacgtcaacaacagccacaacctcaacct
gagccgcaaccaccactcgccactacggtgccaccagcagcggctcacagcgttatgttt
accgcaccctcaatgggtttctccgccgtaccccgtactcctcaggcatcacctgccatc
gctcccgatacaccaccgctgccgcccatctcagctgaagatctgcaacaaatgtcggtg
gacgaacaacgcgccgctctgggtgacaggctctacattaaggtgcatgagcttgctccg
gatcacgcaccgaaaattactggcatgttccttgagatgaaccctaaggaggcgttagcc
ctcctttccaaccctaaactaatgcacgagaaggttacagaagccctctgtgtgctaaag
gtacacgcctcaagcgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (67)   
   KEGG ORTHOLOGY (1)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (82)   

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