KEGG   Trypanosoma brucei brucei: Tb927.5.4030
Entry
Tb927.5.4030      CDS       T01013                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7p
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
tbr  Trypanosoma brucei brucei
Pathway
tbr03018  RNA degradation
tbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tb927.5.4030
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tb927.5.4030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbr03019]
    Tb927.5.4030
   03041 Spliceosome [BR:tbr03041]
    Tb927.5.4030
Messenger RNA biogenesis [BR:tbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Tb927.5.4030
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Tb927.5.4030
Spliceosome [BR:tbr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Tb927.5.4030
SSDB
Motif
Pfam: LSM BPL_C
Other DBs
NCBI-GeneID: 3657513
NCBI-ProteinID: XP_845073
UniProt: D6XGY7
Position
5:complement(1243191..1243469)
AA seq 92 aa
MSAQQAHILKKKESILSLEPHLDRRVVVSLEDREVHGVLKGFDNNINLVLANAEIWNKDV
RERQIGACVVRGGLLVSVSSGDTAILQQNPFQ
NT seq 279 nt   +upstreamnt  +downstreamnt
atgtcggcacagcaggcacacatccttaagaaaaaggagagcatactttcactagagccg
catctggatcgtcgtgttgttgtttcattggaggaccgcgaagtgcatggcgtgctgaag
ggattcgacaataacattaaccttgtccttgcaaacgcggagatatggaacaaagatgtg
cgcgagcgtcaaatcggtgcctgcgttgtccgtggaggtctcctcgttagtgtgtcatca
ggtgacacagcaatccttcaacagaacccattccagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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