KEGG   Tribolium castaneum (red flour beetle): 658113
Entry
658113            CDS       T01046                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
tca  Tribolium castaneum (red flour beetle)
Pathway
tca03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    658113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tca03041]
    658113
Enzymes [BR:tca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     658113
Spliceosome [BR:tca03041]
 Complex C
  Other components
   Step II factors
    658113
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 T2SSE AAA_30 AAA_7 Microtub_bd ATPase cobW AAA_16 Sigma54_activat SRP54 ABC_tran
Other DBs
NCBI-GeneID: 658113
NCBI-ProteinID: XP_969616
Position
LG3:26256459..26281374
AA seq 1186 aa
MESEENLHRLEGISDQKGGLIVKKKPPTFKVPQPSLLGLDRLAAAKRREKEEAARKMSFT
MDDNDNTDDSSSLLKEKHSKDSRKFRSPHNETPTYTGGISDEARERLIERLKSNKQKEKG
VYATTKDRHRDRDRDRERDKDRDRGRHRDRESSHRSKTPRFRDEPKTPNLGHKDEISKSS
WDDDDDVGPSKKSSWDFPTPSTYKGSGGDWSERSTKSRKYDESKRSSRESKRRKYEDESA
RFTPAHKYNSWAKDRKRSGATPMPGKDGVIKWDNTVDRELWEEEQKRIDREWYNMDEGYD
DGNNPFSSVSEEYTKKKEEQLEQRKKKRLSAQQRQINKDNELWERNRMLTSGAVHSIDFN
EDYDEESIDRVHLLVHNIVPPFLDGRIVFTKQPEPVIPVRDPTSDMAIVSRKGSHLVRVY
REQKERKKAQKKHWELGGTKIGNIMGIKKKEDEEDKRFNKEDDTADYKTDQKFAEHMKST
EASSDFAKKKTILEQRRYLPVFAVRQELLNVIRENSVVIIVGETGSGKTTQLTQYLHEDG
YSKYGMIGCTQPRRVAAMSVAKRVSDEMGTQLGDDVGYAIRFEDCTSENTVIKYMTDGIL
LRESLREPDLDHYSAVIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSSKFS
MFFGNVPTFTIPGRTFPVEILFSKNPVEDYVDAAVKQALQIHLQPPSGDILIFMPGQEDI
EVTCEVLAERLAEIENAPELSILPIYSQLPSDLQAKIFQRSPEGIRKCVVATNIAETSLT
VDGIIFVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAFRLYTERQ
YKEELLVTTVPEIQRTNLANTVLLLKSLGVQDLLQFHFMDPPPQDNILNSLYQLWILGAL
DHTGVLTKLGRQMAEFPLDPPQCQMLIVSSQMGCTAEILIIVSMLSVPSIFYRPKGREEE
ADGVREKFQVPESDHLTYLNVYNQWKQNKYSSHWCNEHFIHIKAMRKVREVRQQLKDILV
QQKLEIKSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGST
PDYVVYHELVMTAREYMQCVTAVDGHWLAELGPMFFSLKETGKSGRAKKKQAAEHLQEME
NQMQVAQEEMRARKEAADKREAAMNKGQEIVSAGATPRRTPARFGL
NT seq 3561 nt   +upstreamnt  +downstreamnt
atggaatctgaggagaatttgcaccgcctggaaggcataagtgaccaaaaaggcggcctg
attgtaaaaaagaagcccccaacattcaaagtgccccaaccttcgctcctaggcctcgac
cgtctagcggcggcaaagcgtcgcgaaaaggaggaagcagcacgaaaaatgtcttttaca
atggacgataatgacaacaccgacgattcaagttcactcttgaaggaaaaacactcaaaa
gacagtcgcaaattccggtcaccccacaacgagacccccacgtacactggggggatcagt
gacgaggcccgcgagcgcctcatcgagcgtctcaagtcgaacaaacagaaggagaagggg
gtttacgcgacgactaaagacagacacagggatagggatagggaccgggagagggataag
gacagggacagggggcgccaccgagacagggagagttcgcatcgttctaagaccccacgg
tttcgagacgagcccaagaccccgaatttgggacacaaggacgagatttcaaagtcgtca
tgggatgacgatgatgatgtcgggccctcgaaaaagtcttcgtgggatttcccgacgcct
tcgacttacaaagggagcggtggggattggtcggagcggagcaccaagtcacggaagtac
gacgagtcgaagcgaagctcgcgcgagagtaaacgaaggaaatacgaggatgagagtgcg
aggtttacgccggcccataaatacaattcctgggccaaagacaggaaacggagtggggct
acgcccatgcctggcaaagatggggttatcaagtgggataacaccgtcgatagggaatta
tgggaggaggaacagaagaggattgacagggaatggtacaatatggatgaggggtacgat
gatggaaataaccctttttcgagcgtcagtgaggaatatacgaagaaaaaagaagaacag
ttggagcaaaggaagaagaagcggctttcagcacaacaaagacagatcaataaggataat
gagttgtgggagaggaacagaatgctgacttcgggggctgtacattccattgactttaat
gaagactacgatgaagaatccatcgatcgggtccatctgttggtgcacaatattgtgccc
ccttttctggacgggaggattgtcttcaccaaacagccggaaccggtcattcctgttagg
gaccccacttctgacatggccatagtctcgcgcaaaggctcgcaccttgtgcgggtgtac
cgtgagcagaaggagcgcaaaaaggctcagaagaagcattgggagcttggaggcaccaaa
atcggcaacatcatgggaatcaagaaaaaggaggacgaagaagataaacgattcaacaaa
gaggacgacacggctgattacaaaaccgatcagaaattcgccgaacatatgaaatcgaca
gaagcctccagtgatttcgccaagaagaagactattctcgaacagagacgatatttgccc
gtttttgccgtccgacaagaattgctgaatgttatcagagagaattcggttgttattatt
gtgggggagaccggaagcgggaagaccacccagctgacccaatacttgcacgaggatggg
tatagcaaatatgggatgattggatgcacccaaccgagaagagttgcagctatgtctgta
gccaaacgtgtgagtgacgaaatggggacccaattaggggacgacgtcggttacgccatc
cgtttcgaagactgcacttctgaaaacacagtaatcaaatacatgactgatggtattttg
ctgagagagagcctccgagagcccgacttggaccactacagtgccgtaattatggacgag
gctcacgagaggtcgctcagtaccgacgtcctttttggcttgctgagagagattgtggct
cgccgtcacgacctcaaactcatcgtcacctccgccacgatggactcgagcaaattctcg
atgtttttcggcaacgtgcccaccttcacaattcctggtcgcacattccctgtggaaatc
ctcttcagtaaaaatccagtggaggattatgtggacgctgccgtcaagcaggctctccaa
atccacctccaacctccgtctggagatatccttatttttatgcccggtcaggaggacatt
gaagtgacgtgtgaagtcctggctgagagacttgcagagattgaaaatgctccagaattg
tcaattttgccgatttattcacaactaccgtccgatctacaagcgaaaatttttcaacgg
tcaccggaagggattaggaagtgtgtggtggcgacgaatattgcggaaacgtcgttgact
gtcgatgggattatttttgtcatcgattcgggttattgcaagttgaaggtttataatcct
aggattggtatggatgcgctccagatttacccaataagtcaagccaatgccaatcaaagg
tcgggaagggcgggccgtactggtccaggtcaggctttccgactctacaccgaaaggcaa
tacaaagaagaattgctcgtaacgactgtacctgaaattcagcggacgaatttagccaat
acggtcctgctgttaaaatcgttgggagtacaagatttgctccaatttcatttcatggac
cctccgcctcaagataatattctcaattctttgtaccaattatggattttgggcgccctt
gatcataccggcgtcctgacaaaactcggccgacaaatggccgaatttcctctagatcca
cctcaatgtcagatgttgattgtttcaagtcagatggggtgcactgccgaaattttgata
atagtatcaatgttgtcagtgccgtccattttctataggcctaaaggacgcgaggaggaa
gccgatggagtcagagagaagttccaagttccggaaagtgaccatttgacttaccttaac
gtttacaaccagtggaaacaaaataaatattcatcgcattggtgcaacgagcattttatt
cacatcaaagcgatgcgtaaagtgagggaagtgagacaacagttgaaggatatcctagtg
caacaaaaactggagattaagtcgtgtggcaccgactgggatatcgtcagaaaatgcatt
tgctcggcttatttccaccaagcagcgcgcttgaagggcatcggcgagtacgtcaattgc
cgtacgggcatgccctgccacctgcaccccacatcggcccttttcggcctcgggagcact
cccgactacgtcgtctaccacgagctggtgatgacagcccgcgagtacatgcagtgtgtc
actgcggtggacggccattggttggccgaactaggcccaatgttcttctcactgaaagaa
accgggaaaagtggccgggcgaagaagaaacaagccgccgagcacctccaggagatggag
aaccagatgcaggtggcccaggaggagatgagggcccgcaaggaagcggcggacaagcga
gaggcggccatgaacaagggccaggagattgtttcagccggggcgacgccgagaaggaca
ccggcccggtttggtttataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (63)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (18)   
   Pfam (18)   
All databases (90)   

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