KEGG   Theobroma cacao (cacao): 18610901
Entry
18610901          CDS       T02994                                 
Name
(RefSeq) uncharacterized LOC18610901
  KO
K10756  replication factor C subunit 3/5
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03030  DNA replication
tcc03410  Base excision repair
tcc03420  Nucleotide excision repair
tcc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18610901
   03410 Base excision repair
    18610901
   03420 Nucleotide excision repair
    18610901
   03430 Mismatch repair
    18610901
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tcc03032]
    18610901
   03036 Chromosome and associated proteins [BR:tcc03036]
    18610901
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18610901
DNA replication proteins [BR:tcc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    18610901
  DNA Replication Termination Factors
   ELG1-RFC complex
    18610901
Chromosome and associated proteins [BR:tcc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    18610901
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     18610901
  Check point factors
   HRAD17(Rad24)-RFC complex
    18610901
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA_16 DNA_pol3_delta Rad17 Arg_tRNA_synt_N
Other DBs
NCBI-GeneID: 18610901
NCBI-ProteinID: XP_017979494
Position
1:complement(1446728..1451514)
AA seq 776 aa
MENLSRSSKASQPHSSAPLKQRRSGYEPSDTETEWHESPWHDLNRKNGTSNLAEADKFKS
NLPRNIIPFKLRRRHPSKVEYDKGSPPRTSPLPRRHSSKSPYKTRRDDDRNISPLSKSEH
RRHLSPYKPGREEHKLSNEMGNGEIAGLNRKQNRRTPTKEERGTIGELLETGRVSGKPNY
SRRSVTAPARQRGREKDQLNNLGHGQLEQRRERTPSPISMNMIRKQREASQVKQQSVGEI
NEMVANAKISRAPMLNAAIFESSESISPGDIFFSRDGVALTMQKNVLPNNRGVENHLLPK
PPMFAQKDSASHQRTKANGNVDSKARGSSASTGLSRTTMTSSSAASRQSSGKLSTESSKM
SDSSVNSGKFTYNRRKGQSEAWFACVMRGPCRTSKKSPERQAFDEASFIGKAFVVEKLRQ
FWADKYQPASLNGFTCHKQEAQLLKQFASHESCPHVMFKGPSGSGKRALTMAFLREIYGD
PCWNVSHELRQFPIQDKRPSEVTVPLASSAHHVELNVNLETNAKYALMGLVKEISSNYAI
TPEVSTANFKADYKVIVLYEVDKAPENIHHLIKWIMDCHSDYCKFMLCCEDDINILESVK
NRCKVIKVDAPVTHEIMEVLIQIAKKEDFDLSMNFAAKIAAKSKQNLRKAIMALEACKAH
NYPFSDDQPIPLGWEEVLAEVATEILSDPSQKRLFFIRGKFQKLLVDFVHPKLILQKLVE
QFLKQVEAGLKRELYYWHAYYEKRLPTGTSALLKLEEFVAKFMSIYRKSCGDRQFV
NT seq 2331 nt   +upstreamnt  +downstreamnt
atggagaacttgtcacgcagcagcaaagcttctcagcctcattcctcggctccattgaag
caaaggcggagtggttatgagccgtcagatacggagactgaatggcatgaaagtccctgg
catgatctcaaccgaaagaatggaacatccaatcttgcagaggcagataaatttaagtcc
aatttgccaagaaacattatccctttcaaactccgccgaagacatccttcaaaggttgaa
tatgacaaaggctctccacctagaactagtccgcttccaaggagacatagcagcaagtct
ccttacaagacaaggagagatgatgatagaaatatcagccccttgtcaaaatctgagcac
cgaaggcatctctctccttataaacctgggagagaggagcataaattgagtaatgaaatg
gggaatggtgagattgctggcttaaacaggaagcaaaatcgtagaactccaacaaaagaa
gaaagaggaacaatcggagagcttcttgagactggtagagtgagtggaaaaccgaactat
agtcgtcgatcagtgactgctccagcaagacagagaggtagagagaaggatcaactgaac
aatcttggtcatggtcaactagagcaaagaagggaaaggacaccatcaccaatctcaatg
aacatgatacgcaagcaaagagaagcttcccaggtgaaacaacaatcagtcggtgaaatc
aatgaaatggtcgccaatgcaaagatttctagagctcctatgttaaatgctgctattttt
gaaagctcagagtccatttcgcctggtgatatcttcttttctcgtgatggtgtggccttg
acaatgcagaagaatgtcttgccaaataatcgtggcgttgaaaatcatttgctcccaaag
ccaccaatgtttgcgcaaaaagattctgcttcccatcaacgaacaaaagctaatggaaat
gttgattccaaagctcgagggtcctcagcaagcactggtttatcacgaacaactatgact
tcgagttctgctgctagcagacagagtagtggtaagcttagcactgaaagtagtaagatg
agcgatagtagtgtaaactcagggaagttcacatacaatagacgaaagggccagagtgag
gcctggtttgcttgtgtgatgagaggaccctgcaggacctcaaagaaatcaccagaaagg
caagcatttgatgaggcctctttcattgggaaagcatttgttgttgaaaagctgaggcaa
ttttgggctgataaatatcaaccagcttctctgaatggattcacttgtcacaaacaagaa
gctcagcttctgaagcaatttgcatcccatgagagctgtcctcatgttatgttcaaagga
ccatctggttctgggaaaagagcactaacaatggctttcctgcgtgaaatatatggtgac
ccttgttggaatgtatctcatgaattaagacaattcccgattcaggacaaaaggccatca
gaagtaactgttccacttgcttcaagtgctcaccatgtggagcttaatgtaaacttggaa
acaaatgctaaatatgcattgatgggtttagtcaaggaaataagcagcaattatgcaatc
acccctgaagtcagcactgctaatttcaaggcagattacaaagttatagttctttatgaa
gttgacaaggcaccagagaatatccatcacttgataaaatggatcatggactgtcattcg
gattattgtaaatttatgctctgctgtgaagatgacataaatatcctagaatcagtaaag
aatcgctgcaaagttataaaagtagatgccccagtaactcatgaaatcatggaggtgctt
attcagattgcaaagaaagaggactttgacctatccatgaactttgctgctaagattgct
gccaaatcaaagcaaaacctcaggaaagcaatcatggctcttgaagcctgcaaagcacac
aactatccattttctgatgatcaaccaattcctcttggatgggaagaggtcttggcagaa
gttgcaacagaaatcctgtctgatccatcacaaaaaagattattcttcattcgaggaaag
tttcagaaacttcttgtggattttgttcatcctaaactgatcctccagaagctagtagaa
cagtttcttaagcaagttgaagctggtttaaaaagggaattatattattggcatgcttac
tatgagaagaggctaccgacaggaacgagtgcgttattgaaattagaagagtttgtggcc
aagtttatgagcatatataggaagagttgcggtgaccgtcagtttgtgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (36)   

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