KEGG   Torulaspora delbrueckii: TDEL_0D02490
Entry
TDEL_0D02490      CDS       T02236                                 
Symbol
TDEL0D02490
Name
(RefSeq) hypothetical protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
tdl  Torulaspora delbrueckii
Pathway
tdl03018  RNA degradation
tdl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tdl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TDEL_0D02490 (TDEL0D02490)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TDEL_0D02490 (TDEL0D02490)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdl03019]
    TDEL_0D02490 (TDEL0D02490)
   03041 Spliceosome [BR:tdl03041]
    TDEL_0D02490 (TDEL0D02490)
Messenger RNA biogenesis [BR:tdl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TDEL_0D02490 (TDEL0D02490)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TDEL_0D02490 (TDEL0D02490)
Spliceosome [BR:tdl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TDEL_0D02490 (TDEL0D02490)
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF4325
Other DBs
NCBI-GeneID: 11502268
NCBI-ProteinID: XP_003681044
UniProt: G8ZT89
Position
4:485240..485488
AA seq 82 aa
MSAKGTSSVSSQFLSEIIGKPVNVKLHSGMLYSGRLESIDGFMNVALSKVTEHYENGHNG
LLRNYNTDVFLRGTQVMYISEV
NT seq 249 nt   +upstreamnt  +downstreamnt
atgtctgccaagggaacctcgagtgtgtcgtcacaattcctgtccgagatcatcggcaaa
ccagtaaacgtgaaactgcactctggaatgctgtatagcggccgtttggagtcgattgat
gggtttatgaacgtagcactgtcaaaagttactgaacattatgagaatgggcacaatggg
ctgctcagaaattacaacacagatgtttttctgagagggactcaggtcatgtatattagt
gaagtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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