KEGG   Tessaracoccus flavescens: BW733_01265
Entry
BW733_01265       CDS       T04703                                 
Name
(GenBank) RNase J family beta-CASP ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
tfa  Tessaracoccus flavescens
Pathway
tfa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tfa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BW733_01265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tfa03019]
    BW733_01265
Messenger RNA biogenesis [BR:tfa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BW733_01265
SSDB
Motif
Pfam: RNase_J_C Lactamase_B Lactamase_B_2 RMMBL
Other DBs
NCBI-ProteinID: AQP49661
UniProt: A0A1Q2CU89
Position
complement(253715..255391)
AA seq 558 aa
MTDVKTPPKLAPGTLRIIPLGGLGDVGRNMTAFEIDGQIALVDCGVLFPEDNHPGVDLIL
PALDYLDGRLDDIVALVLTHGHEDHIGAVPYLLKRRSDIPVYGSKLTLAFLAAKLREHRI
RNFNLDAVEEGDILEIGNYEFEFLAVNHSIPDALAVAIRTKAGTVLHTGDFKMDQLPLDG
RITDLRGFARLGEEGVDLFMADSTNAEVPGFTTPEVDVEPAIARVFDAANGKLIVACFAS
HVHRVQQVLNMAVKHGRKVVYVGRSMVRNMSTARDLGYLKVPAGTLIELKDIDKYADDEV
VIVSTGSQGEPMAALSRIANREHPVVEVGPGDTVLLASSLIPGNENSVYRVVNGLSKLGA
NVVHKGNALVHVSGHASAGELLYCYNIIRPRNAMPVHGEVRHLIANGKLAEKTGVPKDRV
IVAGDGDVIDLRKGVARKVGTIDASYIFVDGSTVGDISDSIMDRRILGEEGFVSVITVVD
LHNRSIVSGPEIQARGLAEDDSVFKEAKQRVSDALKDAMRDGVDDPHRLQQVTRRAVGQW
VAKSLRRRPMIVPVVVTT
NT seq 1677 nt   +upstreamnt  +downstreamnt
atgaccgacgtcaagacaccacccaaactggcccctggaaccctgcggatcatcccgctg
ggaggactcggagacgtcggccgcaacatgaccgccttcgagatcgacggccagatcgcg
ctcgtcgactgcggcgtgctgttcccggaggacaaccatccgggcgtcgacctgattctt
cccgccctcgactacctggacgggaggctcgacgacattgtcgccctcgtgctcactcac
ggccacgaggaccacatcggagccgtgccctacctcctcaagcggcgctccgacatcccc
gtctacggctcgaagctgacgctggcgttcctcgccgcgaagctgcgcgagcaccggatc
cgcaacttcaacctcgacgccgtcgaagagggcgacatcctcgagatcggcaactacgag
ttcgagttcctcgccgtcaaccactcgatccccgacgcgctggccgtcgcgatccgcacc
aaggcgggcaccgtcctgcacacgggcgacttcaagatggaccagctcccgctcgacggt
cggatcaccgacctgcgcggcttcgcccggctcggcgaggagggggtcgacctgttcatg
gccgactcgaccaacgcggaggtgcccggcttcaccacccccgaggtcgacgtggagccg
gccatcgcgcgggtgttcgacgcggcgaacggcaagctgatcgtcgcctgcttcgcctcg
cacgtgcaccgcgtccagcaggtgctcaacatggcggtcaagcacggcaggaaggtcgtc
tacgtcggccgctcgatggtgcgcaacatgtccaccgcccgcgacctcggctacctcaag
gttcccgcgggcaccctgatcgagctgaaggacatcgacaagtacgccgacgacgaggtc
gtgatcgtgtccaccgggtcgcagggcgagccgatggcggcgctcagccgcatcgccaac
cgcgagcatcccgtggtcgaggtcggcccgggcgacaccgtcctgctcgcctcctcgctc
atcccaggcaacgagaactccgtctaccgggtggtcaacggcctgtcgaagctcggggcg
aacgtggtgcacaagggcaacgcgctcgtccacgtctccggccacgcgtcggcaggcgaa
ctgctctactgctacaacatcatccggcccaggaacgcgatgcccgtgcacggcgaggtc
cgccacctgatcgccaacggcaagctggccgagaagaccggcgtcccgaaggaccgcgtc
atcgtggcaggagacggcgacgtgatcgacctcaggaagggcgtggcccgcaaggtcggc
accatcgacgcgagctacatcttcgtcgacggctctacggtcggcgacatctccgactcg
atcatggaccgccgcatcctgggcgaggaggggttcgtctcggtgatcacagtcgtcgac
ctgcacaaccgctcgatcgtctccggcccggagatccaggcccgtggcctcgccgaggac
gacagcgtgttcaaggaggcgaagcagcgcgtcagcgacgccttgaaggacgcgatgcgc
gacggcgtcgacgacccgcacaggctgcagcaggtgacgcgacgcgccgtggggcagtgg
gtcgcgaagtctctgcgccgacgccctatgatcgtcccggttgtcgtcaccacgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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