KEGG   Taeniopygia guttata (zebra finch): 100220998
Entry
100220998         CDS       T01082                                 
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3 isoform X1
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100220998 (DROSHA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgu03019]
    100220998 (DROSHA)
   03009 Ribosome biogenesis [BR:tgu03009]
    100220998 (DROSHA)
   03036 Chromosome and associated proteins [BR:tgu03036]
    100220998 (DROSHA)
Enzymes [BR:tgu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     100220998 (DROSHA)
Messenger RNA biogenesis [BR:tgu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     100220998 (DROSHA)
Ribosome biogenesis [BR:tgu03009]
 Eukaryotic type
  90S particles
   RNase
    100220998 (DROSHA)
 Prokaryotic type
  rRNA processing factors
   100220998 (DROSHA)
Chromosome and associated proteins [BR:tgu03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     100220998 (DROSHA)
SSDB
Motif
Pfam: Ribonuclease_3 Ribonucleas_3_3 dsrm YcaO
Other DBs
NCBI-GeneID: 100220998
NCBI-ProteinID: XP_030121245
Ensembl: ENSTGUG00000001955
Position
2:complement(59173304..59248153)
AA seq 1336 aa
MSFHSGRGCPRGQGGPGARTSTQTYRPQNLRQLHPQQPSVQYQYEQQTAPPTTYSNPPAT
GYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPTPPPVPNPSN
TPVPGTPAGQSTFPYMMPPPTVPHPPPPPVMPQQVSYQPVYSAGYSQQSFPPPSFSSYQH
SSGSFPSSTAGSSASSSHFRHTGQYQGEKSQSDRRSPDRSKHYDEHRHREHGHIHGDRHR
SANHGDRRDRGRSPDRRRQESSRHRTDYERGRISPHHRSYERNRERERERHRHRDSRRSP
SPDRSYKKDYKRAGSRSPSRERKRTRWEEDRERWSENQSSSKEKNYTAVKDKESEENASE
KNEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAK
AKAARPPWEPPKTKLDEDLESSSESECDSEDDSSCSSSSDSDVIDVIAEIKRKKAHPDRL
HEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITV
SPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPE
NFCVRGLELFSSYLFKDILELYDWNLKGPSLENDSVSCPRYHFMPRFVRFLPDGGKEVLS
MHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLD
REQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKL
SQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMH
LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHIHMR
KKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLAT
YRTAIVQNQHLAMLAKKLELERFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE
EAKQLFGRLLFNEKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIF
THVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLR
SSLVNNRTQAKVAEELGMQEFAITNDKTKRPVTLRTKTLADLLESFIAALYIDKDLEYVH
TFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTY
TVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKELRWE
REHQERESEETEEARK
NT seq 4011 nt   +upstreamnt  +downstreamnt
atgtctttccattctgggcgaggatgtccccgtggccaggggggaccaggagcaaggact
tcaacacagacctaccgccctcagaacctccggcagctccacccacagcagccctctgtg
cagtaccagtatgagcagcaaactgcccctccaacaacctactccaaccctccagccacc
ggttacatgcctcccaggccagactttgtgccctatcctcctccagtgcccccttccaca
caaaatcccatcagccagtgtcccatgaggccaccatttccaaaccaccagatgaggcag
agcttcccagtgcctccatgtttcccacccactcctccaccagtgccaaaccctagcaac
actcctgtgccaggaacacctgctggacagagcacctttccttacatgatgcctcccccc
acagtaccacaccctcccccaccgccagtcatgccgcagcaagtcagctaccagcccgtg
tactcggcaggatactcgcagcagtcgttcccgccgcccagcttcagcagctaccagcac
agctctggctccttcccgagcagcactgccggcagcagcgccagcagcagccacttcagg
cacacggggcagtaccagggagagaagtcccaaagcgaccggcgctcccctgacaggagc
aagcactacgatgagcaccggcaccgcgagcacgggcacattcacggcgacaggcatcgc
tccgctaaccacggggatcgtcgtgatcggggccgcagtccggataggaggaggcaggaa
agcagtcggcaccggacggattatgagagaggaaggatatcgcctcatcacagaagttac
gagcgaaacagggagcgggagagggagaggcatcggcaccgtgacagcagaagatcacca
tcaccagacagatcctacaaaaaggattacaagagagcaggaagccggtctccaagcaga
gaaagaaagagaacgcggtgggaggaggacagagaaaggtggtctgaaaaccagagctcc
agtaaagagaaaaattatactgctgtcaaagacaaagaatcagaagagaatgcatcggaa
aaaaatgaagaggaagatgaagaattgcttaagccagtctgggttcgctgtacccattct
gaaagctattattccaatgaccctatggatcaagtgggggactctactgtggtaggaaca
agcaagctccgggatctgtatgaaaagtttgacgaggagttaggaaagcgacaggcaaag
gccaaagcagccaggccaccatgggagccaccaaaaaccaagctggatgaagatttagag
agctccagtgagtcagagtgtgactccgaagatgacagcagctgctccagcagttcagat
tcggatgttattgacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgactc
catgaggaattgtggtacaatgatccaggacagatgaatgatggacctttgtgcaaatgc
agtgctaaagcccggagaacaggaataagacatggcatttatcctggcgaagagcccatt
aaaccatgtcgtcccatgaccaacaatgctggaagactataccactaccgaattactgtg
tcacctcccacaaatttcttaacagacagacctactgttattgagtatgatgaccatgaa
tatatctttgaagggttctccatgtttgcacatgccccgctgacaaacattcctctatgc
aaagtaatcaggtttaacattgactatacaattcatttcattgaggagatgatgcctgag
aatttttgtgtgagaggccttgaactgttctcttcatatctattcaaagatattttggag
ttgtatgactggaatcttaaaggtccttcacttgaaaatgattcagtttcctgtcccaga
tatcacttcatgccacggtttgtgagatttcttccagatggaggaaaagaagtactctca
atgcatcagattcttctctacttgttacgatgcagtaaagctctggtgcctgaagaggag
attgccaatatgcttcagtgggaagaactggaatggcagaaatatgcagaagaatgcaaa
gggatgatcgttaccagccctggcatgaagcccagctcagttcgtattgatcaactagac
cgcgaacaattcaatcctgatgtaattacctttcctattattgtgcactttgggatacga
cctgctcaactcagttatgctggagatcctcaataccaaaagctgtggaagagttatgtg
aagctgcgtcacctactggctaatagtcccaaagtcaaacaggctgataaacagaaatta
tcacaaagagaggaagcactgcagaaaattcgccagaagaacacaatgagacgtgaagtg
accgtggaattgagcagccagggattctggaaaacagggatacgctctgacgtctgccag
catgcaatgatgcttcctgtcctcacccaccatgtccgttaccatcagtgtctgatgcac
ctggacaaattgataggctacacttttagagataggtgcttactgcagcttgccatgact
cacccaagccatcatttaaactttgggatgaatccggatcatgccagaaattccttatcc
aactgtgggattcgacagcccaagtatggagatagaaaagttcaccatatacacatgaga
aaaaaaggaataaacaccctgataaatattatgtcccgtttgggacaggatgatccagct
ccttccagaattaaccacaatgagcgtttagaatttctgggagatgctgtggtggagttc
ttaacaagtgtccacttatactacctgtttcccactctggaggaaggaggattagctacg
taccgcactgccatcgtacagaaccaacacctggccatgctggctaagaagctggaacta
gaacgattcatgctctatgctcatggtccagacctttgcagggagtcagatctccgccat
gccatggccaactgctttgaagccctaataggagctgtttatctggagggaagcttagaa
gaagcaaaacaattatttggacgtttgctcttcaatgaaaaggacctgcgggatgtatgg
cttaattatccactacacccactccaactacaggagtccaatactgacaggcaactcatt
gagacctctccggttcttcaaaagcttacagagtttgaggaagcaattggagtcatcttt
actcatgttcgacttctagcacgtgcattcactctgaggacagtaggctttaaccatctg
actctaggccacaaccagaggatggaattcctgggtgactccataatgcagttggtagcc
acagagtatttattcatacatttccctgatcatcatgaagggcacttaacgctgttgaga
agttctttggtgaacaacaggacacaggccaaggtggcagaagagctgggcatgcaagag
tttgccatcactaatgacaagacaaaaagacctgtaactcttcgaactaagactttggct
gatctcttagaatcttttattgctgccctttacattgataaagatttggaatacgttcac
actttcatgaatgtttgcttttttccacggctaaaggagtttatattaaatcaagattgg
aatgatcctaaatctcagcttcagcagtgctgcttgactctcaggacagaaggaaaagag
ccggacattcctctttacaagaccttgcagacagtggggccttctcatgccaggacgtac
acagtagctgtctatttcaaaggagaaagaataggatgtggtaaaggtccaagtattcag
caagcagaaatgggagctgcaatggacgcacttgaaaaatataactttcctcagatggcc
catcagaaacggttcattgaacggaagtacagacaagagttgaaagaattgaggtgggaa
agagagcatcaagagagagagtcagaggagactgaagaagcaaggaaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (52)   

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