KEGG   Thermosipho sp. 1070: Y592_00020
Entry
Y592_00020        CDS       T04909                                 
Name
(GenBank) hypothetical protein
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ther  Thermosipho sp. 1070
Pathway
ther03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ther00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Y592_00020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ther03019]
    Y592_00020
   03400 DNA repair and recombination proteins [BR:ther03400]
    Y592_00020
Enzymes [BR:ther01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Y592_00020
Messenger RNA biogenesis [BR:ther03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Y592_00020
DNA repair and recombination proteins [BR:ther03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Y592_00020
SSDB
Motif
Pfam: DEAD Helicase_C Pribosyltran Aconitase_C PRTase_2
Other DBs
NCBI-ProteinID: ANQ54533
Position
complement(3616..7575)
AA seq 1319 aa
MKNRKNKQNILDIEIENFFKTDQYHYIYFTDFEYKFKIDDYSIFSLSTYYPKNSFSDDIL
DDQERIYRRYIYEFKDGNEKISELFCDIISRLIIKNNIINDKNNTAISIIPASNKEKTEI
RYKNFVKNLSVKLDVINGYDFIKNLIDRPSKHREHFKGNILEYLKFDSEKIKGKEIILFD
DIITSGNSFLNIANELKNLGAKNVIGIFLGKTFNEKFRLEDYIIEYEEDLEINKKFYHGE
ASYISHALRNTLKEYYDKMNNFNFKILKNYERKFNEDNPLILTAKIFNNIISRGIPTFAS
IFYDKSIMDSMSDLLSYRKLSDTGTIDYIIELKDEKYFLKVIKKYFSELKMYNVTKNNFF
AKYILSSWLHKVLTNAITDGILDDKEVWNIAIIERDVKFSEISIVDAYNYMNKISKLFDY
NLPKIKLDIYRNEDTTLEILEKNVEVNYYTFDLYKDEYDLTIDIGYKLNVEELETNSPYV
IVRSALKTPELLPEFSKTNSFSHKKYDEYYETQNDVISVVNYKIVVLHNSTYNLLTENEN
MHFFETNNPHLFLPKFFSFKPYKFKINKAKEDVLRFLLQNIFRKVDFRDGQIPIIKRILS
LKSTIGLLPTGAGKSLCYQLSGLLQPGPVIVIDPIKSLMFDQVYNLKALGINSSAYINSD
LSIEEKDFVLENLKNGMYKFIFIAPERLQIKSFRKNLKKLTEFLPVPFVVIDEAHCVSEW
GHDFRTAYLNVARIIKNIAKHDDYEPSIVALTGTASYAVLNDVQKELQIENSAKIYPKSF
ERDELTFFIISTPSNNKNEVLKDILFNKLPSLLETNDVFKLNDCKTKSGIIFTSTVNGLK
GVFEISKFLKNLGINSKIFSGKKPKDSNMNDEEYDKYKINVQKEFKNNEFPLLVATKAFG
MGVDKPNIRYTIHYTLPSSLESFYQEAGRAGRDRKLAYCFLIYSEDYNKFTDAILNVSIS
NEQANKIYSKYKVYDDISTQAFFHFRSFEGEEIERKNLIKLFQKLKPYIKKLDNGKVGYL
TIKSLDKNCEKAIYRLTILGVVEDYTIQYENSSRSYELKLRKLNVEEIKQNLINYLKRYK
TKTYIDNFVKKYFKNKMSFEDFMIKIIEALIEFVYDEIEKQRRRALYTMVEVARNAKTNE
EIKKYILNYFNESVYTKDLIHFIKELNIKELINFMDEIYYEDIEKIENLYGNVQRLLESY
PDNPPLYIISTLSKIKLNYTNDEVIRDWENFLKYLSDNIEEDELDNFVYTIFNKIVNFDI
NENLKKLFYKTLLDNFYLKDIILKFNYLAPTLSKKVVLKRILSKVKKINMYIKGGRKNG
NT seq 3960 nt   +upstreamnt  +downstreamnt
ttgaaaaatagaaaaaacaaacaaaatatactagatatcgaaattgaaaattttttcaaa
acagatcagtatcattatatatattttacagattttgaatataaatttaaaattgacgac
tattctattttctctctttcaacttattatcctaaaaatagcttttctgatgatatttta
gatgaccaagaaagaatatatagaagatacatttatgaattcaaagatggtaacgagaaa
atatcggaacttttctgtgacataatatcgaggcttatcataaaaaataatataattaat
gataaaaataatacggcaatatctattattccggcatcaaataaagaaaaaacagaaatt
cgctataagaattttgttaaaaatctttcggtaaaattagatgttattaatggatacgat
tttatcaagaatttaatcgacagaccttcaaaacatagagaacattttaaaggtaatata
cttgaatatttaaagtttgattcggaaaagattaaaggtaaggagataatactctttgac
gacataataacctctggaaattcatttttaaatatagcaaatgaacttaaaaatttgggt
gcaaaaaatgtaattggaatttttcttggaaaaacttttaatgaaaaatttagattagaa
gattatattattgaatatgaagaagatctagaaataaacaaaaaattttaccatggtgaa
gcttcatatatttcacatgccctgagaaatactctaaaggaatattatgataaaatgaac
aattttaatttcaagattttaaaaaactatgaaagaaaattcaatgaagataatccacta
atattaacagcaaaaatattcaacaatattatttcaagaggaatcccaacatttgcttct
attttttacgataaatctattatggattcaatgagtgatttgttatcatacagaaaatta
tctgacactggaaccattgattatattattgaattaaaagatgaaaagtattttttaaaa
gttataaagaaatattttagtgaattgaaaatgtataatgtaacaaaaaataattttttt
gctaaatacattttatcttcatggttacacaaagttttgacaaatgctataacagatggc
atattagatgataaagaagtttggaatatagctattattgaaagggatgtgaaattttct
gaaatttctattgttgatgcatacaattatatgaataaaatttcgaagttatttgattat
aacttaccaaagataaaacttgatatttatagaaatgaagacacaaccttggaaatcctg
gaaaaaaacgttgaagtaaattactatacatttgatttgtataaagatgaatatgattta
acaatagatattggatataagttaaatgttgaagagcttgaaactaattctccatacgtt
attgttagaagtgccctaaaaactccagaattattaccagaattttcaaagacaaattcc
ttcagtcataaaaaatatgatgaatattacgaaacccaaaacgatgtaatctcagttgta
aattataagattgttgttcttcataatagcacatataatttattaacagaaaatgaaaat
atgcatttctttgaaactaataatccccatctatttcttccaaagtttttctcatttaaa
ccatataaatttaaaataaataaagcaaaagaagatgttttaagatttttgttgcaaaac
atatttagaaaagttgattttagagatggacaaatccccattataaaaaggattctttct
ttaaaatcaacaataggtcttttaccaacaggtgcaggtaaatccttgtgctaccaacta
agtggattgttgcaacctgggcctgtaatagttattgaccctataaaatctctaatgttt
gatcaagtgtataacttaaaagcgctgggaataaattcatctgcatatattaatagtgat
ctttcaatcgaagaaaaagattttgtgcttgaaaatttaaaaaatggaatgtataaattt
atttttattgctccagaaagattacaaataaaaagttttagaaaaaacttgaaaaaatta
actgaatttctccctgtgcctttcgttgttatcgacgaagcacattgtgtttcagaatgg
ggacatgattttagaacagcatatttaaatgtagcaagaattattaaaaatattgcaaaa
catgatgattatgaaccttctattgttgcgttaacgggcacggcttcgtatgcagtatta
aatgacgttcaaaaagaattacaaattgaaaatagtgcaaaaatttatccaaaaagtttt
gaaagagatgaattaacattttttattatctcaactccatctaataataagaatgaagtt
ctaaaagatatcttgtttaataaattgccttcgttattagaaacaaatgatgtattcaaa
ttaaatgattgtaaaacaaaatctggaataatattcacttcaacagtcaatggtctaaaa
ggggtatttgaaatttcaaaatttttgaagaatttggggataaattcaaaaatcttttcc
ggtaaaaaaccaaaagattcaaatatgaatgatgaagaatatgataaatacaaaattaat
gtccaaaaagaattcaaaaataatgaatttccattacttgttgcgacaaaagcttttgga
atgggagttgacaagcctaatattagatatacaattcattatacattaccttcatcactt
gaatctttttaccaagaagcgggtagagctgggagagatagaaaactagcatattgcttt
ttgatctattctgaagattataataaatttaccgatgctatcctaaatgtatctatttct
aatgaacaagcaaacaaaatctattcaaagtataaagtatatgatgatataagtacacaa
gcattttttcattttaggtcatttgaaggagaagagattgaaagaaaaaatttaattaaa
ctttttcaaaaattaaaaccatatattaaaaagctagataatggtaaagttggatactta
actattaaaagcttggataaaaattgtgaaaaagctatttataggttaacgatattaggt
gttgtagaagattacacaattcaatatgaaaattcatcaaggtcttatgaattaaaatta
aggaaattgaatgtcgaagaaataaaacaaaaccttattaattatctaaaaagatataaa
acaaagacatatattgataattttgtaaaaaaatattttaaaaataaaatgtcatttgaa
gattttatgataaaaataatcgaagcattgatagaatttgtttatgacgaaatagaaaaa
caaaggcgaagagcactatatacaatggttgaagttgcacgaaatgcaaaaacaaatgag
gaaattaaaaaatatattttgaattactttaatgaatccgtttatactaaagatttaata
cattttattaaagaacttaatattaaagaacttattaactttatggatgagatttattat
gaagatattgaaaaaattgaaaatctgtatggtaatgttcaaagacttttagaaagttat
cctgataatcctccattgtatatcatttcaactttatcaaaaattaagttaaattatacc
aacgatgaagtaataagggattgggaaaattttttaaagtatttaagtgataatattgaa
gaagatgaattggataactttgtatatacaatatttaataaaatcgttaactttgatatt
aacgagaacttaaaaaaattgttttataaaaccttacttgataatttctacttaaaagac
attatattaaaattcaattatctagctccaacactatctaagaaagttgttttaaaaaga
attttaagcaaggtgaaaaagataaatatgtatatcaaaggaggaagaaaaaatggatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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