KEGG   Thermogladius calderae: TCELL_0413
Entry
TCELL_0413        CDS       T02127                                 
Name
(GenBank) ribosomal RNA-processing protein RRP42
  KO
K12589  exosome complex component RRP42
Organism
thg  Thermogladius calderae
Pathway
thg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TCELL_0413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thg03019]
    TCELL_0413
Messenger RNA biogenesis [BR:thg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TCELL_0413
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     TCELL_0413
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AFK50838
UniProt: I3TDK0
Position
377282..378130
AA seq 282 aa
MSITPQREPIMPKIRAETIVRMLKKGERIDNRGLHDYRNISVSVGIISKAEGSALVKLGG
TQVIAGVKAELGTPFEDRPNEGVLQVHAEFVPLASPSFEPGPPNEEAIEVARVIDRSLRE
PKVVDLSKLVIQPGRLAWVIYDDVYVIDHDGNILDTGMIASMIALATSKLPRLDTTAEGI
KVVYGTKDTPLPINTLVTTVTMGVLGDILVVDPSLEEESVIDTFLSISVDEKGRIVGLQK
RGPRSITPKTLDSAVEIALKAGEQVLSFIRRVISNPQEYTKW
NT seq 849 nt   +upstreamnt  +downstreamnt
atgtcgataactcctcaaagagagcctataatgcccaagataagggctgagacaatagta
aggatgctgaagaagggtgaacgtatagacaacaggggtcttcacgactacaggaacatc
tcggtaagcgtcggcataataagtaaggcggaaggaagcgccctagtgaagctggggggt
acgcaggttatagcgggtgtgaaagcggagctgggcacgcctttcgaggataggccgaat
gagggggttttacaggttcacgccgaattcgtaccactagcctccccctccttcgagccc
ggacccccgaacgaggaggcgatagaggtcgcaagggtaatagacaggagtctcagagag
cctaaggtagtagacctatctaagctggtgatccaaccaggtaggctagcgtgggttata
tacgacgacgtctacgtgatagaccacgacgggaacatactagataccggaatgatagcg
tccatgatagccctcgccacgtcgaagttacctagactcgacacaacagcggagggcatc
aaagtcgtctacgggaccaaggatacacctctaccgataaacactctcgtgacaacggta
accatgggcgtgctaggtgatattctggtcgtagacccgtcgctcgaggaggagagcgtg
atagacacgttcttgtcgatctcggtggacgagaagggacgtatagtaggcctacagaag
agagggccgagaagtatcacgcctaaaacgttggactctgctgtcgaaatagctttaaag
gctggcgaacaagtcttaagctttataaggagggttataagcaatccacaagagtacacg
aagtggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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