KEGG   Thermosipho sp. 1063: BG95_00825
Entry
BG95_00825        CDS       T04625                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
thp  Thermosipho sp. 1063
Pathway
thp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:thp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BG95_00825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:thp03400]
    BG95_00825
Enzymes [BR:thp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BG95_00825
DNA repair and recombination proteins [BR:thp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BG95_00825
SSDB
Motif
Pfam: DEAD Helicase_C TRCF UvrB_inter CarD_TRCF_RID ResIII ERCC3_RAD25_C SecA_DEAD AAA_22 AAA_30 SSV1_D-63
Other DBs
NCBI-ProteinID: APT71529
UniProt: A0A1L7BD64
Position
164255..166954
AA seq 899 aa
MNEIIIVPTEKECNISGYFHIPSYDIFPFEEIENSWYVRSKRIYALYLALEGKLKAISTL
YSLTRYVMPPDIFKKYIFKLKPGDRLNSPEMLFSNLGYKRTYNVTEGGQFSIRGDIIDFF
GPNNIPIRIELFENTIEEIRIFDVATQKSIKNIEYALILPAKEYIEKITHETILGEKYNG
TFIDYNIEFKIVDKKRCIEEYVKKEREIRELIISQDLRKKYIKFSGIDYTKIITLSKESD
IELKPVKFEKEINSIPVISEEEFEMGELVVHKEYGIARFEGTTKILQKGLEREFLILQFK
DSKLFVPTDRLDLIQKYIGAKDTIQLDSLKKNNWQKKVKKVRKEIQNTVKELLRLNALRK
KTKGLSLPGDPELEKEFAKTFPHIETEDQLKAIEEVNNDLMLDKNMDRLIAGDAGYGKTE
VAMRAAFKTVVSGKQVAILVPTTVLARQHFETFKKRVEKFGIKVELFDSSLTQKQKEKVK
ENIKKGITDIVIGTHGIISSIKFSDLGLLIIDEEQKFGVHQKEAFKKVRINLNILSMSAT
PIPRTLHMALSGLKDMSILKTPPIGRKNIQVFVSKFDEKITRHAILREINRGGQVIYVHN
RVNSIEEVANNLKKIVPEVKIDIIHGQLPKRKMEKVIKEFYNGKLDVLVSTSIIENGVDI
PNANTLIVDDAHRYGLSQLYQLRGRVGRSKKRAFAYFFYPEKINKVATERLKAIKEIMGP
GSGFQIALKDMEIRGIGNILGLEQHGFINEIGLNYYFEILDEVLSNMEGKIQSKVTTELL
GMKGSIVIPDNYVNDPVERLRLYRRISSFSNENEINEIYDEFKDRFGTPPQSVLNLLKYA
KIRILASKKGISKIIFKDEAIIAYTNDNLKIDLPHIYNEREKSYIIYSDEETFLKFLQK
NT seq 2700 nt   +upstreamnt  +downstreamnt
atgaacgaaataattatcgttccgacagaaaaagaatgtaatataagcgggtattttcac
attccatcttatgatatctttccatttgaagaaatagaaaattcttggtacgtacgctcc
aaaagaatatacgcgctctatcttgcacttgaagggaaattaaaagctatttccacactc
tactccctaacaagatacgttatgccacctgatatcttcaaaaaatatatttttaaatta
aaaccaggtgatagactcaattcacctgaaatgttattttcaaatctaggatataaaaga
acgtacaacgtaacagaaggagggcaattttcaataagaggagatataatagattttttt
ggacctaataacattcccattcgtattgaattatttgaaaatacaatagaagaaataaga
atatttgacgttgcgacccaaaaaagtattaaaaatatcgaatatgctctaattctaccg
gccaaagaatatattgaaaaaataacacatgaaactatcttaggcgaaaaatacaacggt
acatttatagactacaatatagaatttaaaatagtagataaaaaaagatgtattgaagaa
tacgtaaaaaaggaaagagaaataagggaacttataataagtcaagacttaagaaaaaag
tatataaaattttcgggaatagattacacaaaaattataactctatcgaaagaaagcgac
atagaattaaaacctgtaaaatttgaaaaagaaattaattccataccagttataagcgaa
gaagagttcgaaatgggagaactagtcgtacataaagaatacggtatagcaagatttgaa
ggtactacaaaaatattacaaaaaggtcttgaaagagaatttctaatacttcaatttaaa
gattcaaaactatttgtaccaactgatagattagatttaatccaaaaatatattggggca
aaagataccatacaattagatagtctgaaaaaaaataactggcaaaaaaaggttaaaaaa
gttagaaaagaaattcaaaatacagtaaaagaactcctgagattaaatgcactaagaaaa
aaaacaaaagggttatcacttccaggagatcctgaacttgaaaaagagtttgcaaaaact
tttccacacattgaaacagaagatcaactaaaggctatagaagaagtaaataatgactta
atgttagataaaaacatggatagacttattgctggagacgccggttatggaaaaacagaa
gttgccatgcgcgctgcttttaaaactgttgtttctggaaaacaagtagcaatcttagtt
ccaacgactgtacttgcaagacaacactttgaaacatttaaaaaaagggttgaaaaattt
ggaataaaggtagaactattcgacagctctcttacccaaaaacaaaaggaaaaagttaaa
gaaaatataaaaaaggggatcacagatattgtaataggaacacatggaattatctcttcg
ataaaattctccgatttgggacttttaataatagatgaagaacaaaaatttggtgtccat
caaaaagaggcatttaaaaaagtaagaataaatttgaacatcctttcaatgagtgctaca
ccaattccgcgtaccctacatatggctttaagtggtcttaaagacatgtccattttaaaa
actccacctattggaagaaaaaatatacaagtttttgtgagtaaatttgatgaaaaaatt
actagacatgctatcttaagagaaataaacagaggaggtcaagtaatctacgtacacaac
agggtaaactccattgaagaagtagcaaataatcttaaaaagatagttccagaagtaaaa
atagatattatccacggccaattaccaaaaagaaaaatggaaaaagttataaaggaattt
tacaatggaaaattagatgtacttgtttcaacatctattattgaaaatggagttgatata
ccaaatgcaaacacattaatagttgacgatgctcacagatatggcctttcacaactttat
caactaagaggcagagtgggaagatcaaaaaaaagggcatttgcatactttttttatcca
gaaaaaataaataaggttgcaacagaaaggcttaaggcaattaaagaaattatgggaccg
ggaagtggttttcaaatagctttaaaagatatggaaataaggggaattggaaatattttg
ggacttgaacaacacggctttataaatgaaataggcttaaattattattttgaaatatta
gatgaagtattgtcaaatatggaaggaaaaatacaatcaaaagtaactacagaattgtta
ggaatgaaaggttcaattgttattccagataattatgtaaatgatcccgttgaaaggctc
agactctatagaagaatttcttctttttctaatgaaaatgaaataaatgaaatatacgat
gaatttaaagatagatttggaacacctcctcaaagtgttttaaatcttctaaaatatgcc
aaaataagaattttagcttcaaaaaaagggatttcaaagattatctttaaagatgaagca
ataattgcatacacaaacgacaacttaaaaattgaccttcctcatatatataacgaaaga
gaaaaatcatatataatatactcagatgaagaaacgtttctaaaatttttgcagaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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