KEGG   Thermotoga maritima MSB8: THEMA_02395
Entry
THEMA_02395       CDS       T02976                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tmi  Thermotoga maritima MSB8
Pathway
tmi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tmi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    THEMA_02395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tmi03021]
    THEMA_02395
   03400 DNA repair and recombination proteins [BR:tmi03400]
    THEMA_02395
Enzymes [BR:tmi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     THEMA_02395
Transcription machinery [BR:tmi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     THEMA_02395
DNA repair and recombination proteins [BR:tmi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      THEMA_02395
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RnfC_N Apocytochr_F_C Peptidase_M23 RPOC_hybrid Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: AHD17783
Position
complement(458344..463416)
AA seq 1690 aa
MPMSSFKRKIKAIQIKIASPEVIRSWSGGEVKKPETINYRTFKPERDGLFCERIFGPVKD
YECACGKYKGKKYEGTVCERCGVRVESREARRKRMGHIELAAPAVHIWYLESIPSVLGTL
LNMSTSDLENIIYYGSRRVIERAFIVTDPKDTPFSQGDVIYETEYRIYRKKWDFDVEQAF
VVKNPKSPVLSDIDGEVTLKTEKSITGREITWIIVKNITRATHTVLPGMILVVKDGQEVE
KGQDLTKEMTIDPVYAPFDGHVEIDELSNTITLKPLTTSKDQPVVFTIPYGAKILVSNGQ
KVKKGDQITTSTSLPAVKASISGTVRFGSNLNIRALEDGNFEVLSTGEVYVEQVIEERKY
PVFEGALVYVNNGDQVKKGDHLADRFLFEEEYLSATEYKIFESHYPTMFDVEERTENDRP
IVVITDIDPEVSKETGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQNLDLEAL
QAEIEAELKKLPSSSSKAIKLRRRLKMVKDFLKSGNKPEWMVLEVVPVIPPDLRPMIQIE
GGRFATTDLNELYRRLINRNNRLKKLLELGAPEIILRNEKRMLQEAVDALIHNGSDSEGK
RSRRAVLKDRNGRPLKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPNLKIHQCGIP
KKMAMELFKPFVLAKLLGEGSSSKTMRKVKKAIIEKEMPEAWEVLEEVIKGSVVLLNRAP
TLHRMSIQAFEPKLVEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSR
YNIISPAHGKPISLPTQDIIIGSYYLTTVGKEFDSLKEEDVKWKFSSPEEAMLAYHLGFI
KLHTPILIKVAVNGEEKRIKTTLGRVIFNGILPEDLRDYNRIFDKKQINALVYETFKRHG
IDRAADLLDDIKDIGFHYATVSGLTLSLKDLKIPPERDEILRKTWEKVRIIEENYEKGFL
TEEQRKSEIIRLWMSVTEEITKLTSKTLAEDPFNPIYMMVNSGARGNIDQVKQLAGIRGL
MIKAYDPRSREIKSKIFKGQAIHEALTFDYPVDKNLREGVDILQFFISTYGARKGQVDTA
MNTSFAGYLTRRLVDVAQSVTVAEPDCGTHEGIRAMDLIKEGTVVEKMNEFLFGRVLARD
VLDPETKEVLKNPETGKEYTRNTMLTDDDANFLASYKKMVDVVRYEEIDITELSLPNMYA
EIAEPVGEYEEGTELTWDVIKAAKNEGKYRIKVKVYPVVGTVYAEEEPLYDKKGERQLLV
YQEVINEIVAKMLEENGIEKVSVRPDIIVRSPLTCESEYGVCAACYGMDLSNHKIVNVGE
AVGVVAAQSIGEPGTQLTMRTFHVGGVMGASDIVSGLTTVEKTFEPYAFLREEKSGGKKE
IRKYYGSEAILCEVDGFVKDIATDESGRTVIYIEDYAGNIHAYKVPKRAKVRVEKGQKVL
RGETLTSGAIVWWKLLELESEKGVMTAMNLLKIIKNAYVQQGVSIHDKHFEIIFKQMLSM
ATIVDPGDSDYLPDQLVPLVDIKRFNREILEGNAKVEENRKWVIGKTLAKRIITETEEGE
LVELAQKGDEVTEELLKKIIEAGIKEIDVFEKDKVVTYQILPKEPIKYKRRLLSLKKAAL
NYPGWLSAAAFEETAWVLTAAAIEGKVDPLIGLKENVIVGQLIPAGTGLDVFAGIQVEET
PRAAVEEELA
NT seq 5073 nt   +upstreamnt  +downstreamnt
atgccaatgtcctctttcaagaggaagataaaggcaattcagataaagatagcctctccg
gaagtgataagaagctggtctggaggagaggtcaagaaaccagaaacgatcaactacagg
acattcaagcccgagagagacggccttttctgtgagaggatttttggtcctgtgaaggac
tacgaatgtgcctgtggtaagtacaaggggaagaaatacgaaggtaccgtctgtgaaagg
tgtggagtcagggtcgaatccagagaagccagaagaaaaagaatgggacacatagaactg
gcagcacccgctgtgcacatctggtatctcgagagcataccgagtgttctcggaacactc
ttgaacatgagcacttcagacctggaaaacatcatctactacggcagtcgccgtgtcata
gaaagagcttttattgtgactgatcccaaagatactccgttctcccagggggatgtgatc
tacgagaccgagtacaggatatacagaaaaaagtgggatttcgatgttgaacaggcgttt
gtggtgaagaatccaaaatctcctgttctttccgatatcgatggagaagtgactttgaag
acagaaaagtccatcacaggaagggaaatcacctggatcattgtgaagaacatcaccaga
gccacacacacggtgctccctggaatgattctcgttgtgaaagatggccaagaagtggaa
aaaggacaggatctgacaaaagaaatgacaatcgaccctgtttacgctccgtttgacggt
cacgtggaaatagatgaactttcgaatactattacgttgaaacctctcacaaccagtaag
gatcagccggttgttttcacgattccttatggagcgaagattcttgtttcgaacggccag
aaggtgaaaaaaggtgatcagatcacgacttctaccagcctcccagccgtcaaagcgagc
atatctggtacagtgagatttggttccaacctcaacataagagcacttgaagacggaaac
ttcgaagtcctttccaccggtgaagtctatgtagaacaggttatagaggagagaaaatat
cctgtctttgaaggagcgcttgtctacgttaacaacggcgaccaggtgaagaaaggagat
cacctggctgacagattcctcttcgaggaagaatacctctctgccaccgagtacaaaatc
ttcgagtcgcactatccaaccatgttcgatgttgaagagagaacggaaaacgacagaccg
attgtggtcataacggatatagatcccgaggtttccaaagaaacgggtttgaaggttggc
gatatagtcacagaaaacgagtacgaagcataccttcagatctatccagaaaagatagtg
gctgatgccggggcacaggcgataaagaaactgcttcagaatctggatctggaagcgctt
caggcagaaattgaagcggaactcaaaaagttaccttcttccagctcgaaggcgataaag
ctcagaagaaggttgaagatggtaaaggatttcctgaaatctggtaacaaacccgaatgg
atggttcttgaggttgttcctgtgattccacccgacctcaggccgatgatacagatcgag
ggaggaaggttcgccacaacagacctcaacgaactttacagaagactcataaacagaaac
aacagactcaaaaagcttctggagctcggggcacctgagatcattctgagaaacgagaaa
agaatgcttcaagaagcggttgacgctctcattcacaacggttctgattcggaaggaaag
agaagcagaagagccgttttgaaagatagaaacggtaggcctctgaaatcgctcaccgat
ctactgaaaggaaagaaaggaagattcagaaggaacctgcttggaaagcgtgtggattac
tctggaagagcggttattgtcgtgggcccaaatctgaagatacaccagtgcggtattcca
aagaaaatggcaatggagctcttcaaaccgtttgttctggcgaaactccttggagagggt
tcttccagcaaaaccatgagaaaggtcaagaaagcgatcatagaaaaagagatgccggaa
gcctgggaagtgcttgaagaagtgataaagggaagcgtcgttcttttgaacagagctccc
acactccacaggatgtcaattcaggcgtttgaaccaaaactcgttgaaggaaacgccata
cagctccatcctgtcgtgtgtccaccattcaacgcggattttgacggtgaccagatggcg
gttcatgtaccgctttcggccgcggcgcaggcagaggcaagatttctcatgctttcgaga
tacaacatcatctccccagcacacgggaagccgatttcgctgccgacgcaggatatcatc
ataggttcttactacctcacaacagttggtaaagaattcgactcactgaaagaagaagat
gtgaaatggaagttctcttcgcccgaagaggcgatgctggcttaccaccttggattcata
aaacttcacactccgattctgataaaggttgctgtcaacggcgaggaaaaacgaataaag
acgactctgggaagagtgatcttcaacggcattctcccggaagatttgagggattacaat
agaattttcgacaaaaaacagataaacgctctcgtctatgaaacgttcaagagacacggt
atagacagagctgcggatctcttggatgacataaaagacatcggtttccactacgcaacc
gtttccggtctgactctctcgttgaaagatctgaagataccaccagagagagatgagatt
ctcaggaagacctgggagaaggtcagaataatcgaagagaattacgaaaagggcttcctg
acggaggaacagagaaagagtgaaatcatacgactctggatgagtgtgacggaggagatc
acaaaactcacatccaaaacgctcgcagaggatccgttcaaccccatatacatgatggtg
aactctggtgctagaggtaacatagatcaggtgaaacagctcgccggtatcagaggtttg
atgatcaaggcgtacgacccaagatccagggaaataaagtccaagatcttcaagggtcag
gcgatccacgaagcactcacattcgattacccggtcgataagaacctcagagaaggtgtt
gacatcctgcagttcttcatttccacctacggtgccagaaaaggacaggttgacacagca
atgaacacatcctttgcgggatatctgacgaggcgtcttgtggatgtagcccagagcgtt
acagtggcggaacccgactgtggaacacatgagggaatcagagccatggatctgataaaa
gaaggaacagtcgtggaaaagatgaacgagttcctcttcggtagagtgctcgcaagggac
gtgcttgatccagaaacaaaagaagttttaaagaatccagaaacgggcaaggaatacacg
agaaacaccatgctcacagacgacgatgcgaacttcctggcttcttacaagaaaatggtt
gacgttgtgaggtacgaagagatagacataacagaactctcactccccaacatgtacgcc
gagatagcagaacccgttggagagtacgaagaaggaacggaactcacctgggatgtgata
aaagctgctaagaacgaagggaaataccgcataaaggtgaaggtctatcctgtcgttgga
actgtttacgcggaagaggaacctttgtacgataaaaaaggtgaaagacagcttctcgtg
taccaggaagtgataaacgagatcgtggcgaagatgctcgaagaaaatggaatagaaaaa
gtttccgtgagacccgatatcattgtgagatcgcctctcacctgtgagtccgagtacggc
gtctgcgctgcctgttacggtatggatctttccaaccacaagatagtgaacgtcggagaa
gcggtgggagttgtggccgctcagtccataggagagcccggcacacagctcacgatgaga
acattccacgttggaggagtcatgggtgcgagcgacatcgtcagcggtctcacaactgtg
gagaagacgttcgaaccgtacgcgttcttgagagaagaaaagagcggtggaaagaaagaa
atcagaaaatactatggatccgaagccattctgtgtgaggtcgatggtttcgttaaagac
atagcaaccgatgaaagtggtagaacggtgatttacatcgaggattacgccggtaacatc
cacgcttacaaagtaccgaagagagcgaaagtaagggtagaaaaaggccagaaagtcctg
agaggagaaaccctcaccagcggcgccattgtgtggtggaaactcctggagctcgaatca
gaaaaaggtgtaatgacggcgatgaatctgctgaagatcataaagaacgcctacgtccag
cagggtgtgagtatacacgacaagcacttcgagatcatattcaaacagatgctaagcatg
gcaacgatcgtcgatcctggagacagcgattacttgccggatcaacttgtgccgcttgtg
gatataaagagattcaacagggaaatcctcgaaggaaatgcgaaagtggaagagaacagg
aagtgggtcataggaaagacgctcgcgaagaggatcatcacggaaacagaagagggagaa
ctcgtggaactcgcgcaaaaaggcgatgaagtgaccgaggaacttttgaagaagatcata
gaagcgggaataaaagagatcgacgtcttcgaaaaagataaagttgtgacgtaccagatt
ctcccgaaggaacctatcaagtacaagagaagactcctgtcgctcaagaaagcggctctt
aactaccccggctggctcagcgcggctgcgttcgaagaaactgcgtgggtgttgaccgca
gcggcgatcgaaggaaaggtcgatccgctcattggattgaaggaaaacgtgatcgttggt
cagctgatacccgcaggaaccggtctcgatgtcttcgcgggaatccaggtggaagaaacc
ccaagggctgcagtggaagaagaactcgcgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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