KEGG   Tuber melanosporum: GSTUM_00004452001
Entry
GSTUM_00004452001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12878  THO complex subunit 1
Organism
tml  Tuber melanosporum
Pathway
tml03013  Nucleocytoplasmic transport
tml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00004452001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSTUM_00004452001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00004452001
   03041 Spliceosome [BR:tml03041]
    GSTUM_00004452001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     GSTUM_00004452001
Spliceosome [BR:tml03041]
 Complex C
  Other components
   EJC/TREX
    GSTUM_00004452001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GSTUM_00004452001
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 9181177
NCBI-ProteinID: XP_002835935
INRA: GSTUM_00004452001
UniProt: D5G6E9
AA seq 684 aa
MSPTLLPNGTSASKTVDQLSSHLREILSSVNKTHLEPPLVESDFDPEILARIRLLRSSPD
ELYRNSLDTAFKGALYDLLTNNGAIDTTTLPVFCNFLDLSLVLAELEISGAGLPLDLIEE
LFDSQTIPSCECLFQYLESRIDRVTAGVEGGKGKALILLRLCNELLKRLSKTEDTIFCGR
ILIFLSKSFPIGERSGVNLRGDFNVDNVTVYDDILQEPPTVVDGMELDIKKEEMEVDQKK
EGGSTGAGEADIGSARSPKRLKVEAGQDTSQKEPTVLDANTLYPIFWSLQHDFADPQRLF
VKDNLEKFKVGLGATMAKFKKAEDDSIKTTGKVDVANGPKKADEKKPGVSLGEKRKQIDG
DDDDIKGEGFNPKYLTSRELFELEISDLTFRRHVLVQALILIDFLLSLTPQAKGKWKDLK
TPNRSVQYAFTLGLEDEKWAATTKEQILRSLEPDVQGRLFTRTIKTVLIREQNWVRWKAE
SCHPFDMPPLGDADIEDAKQKAVKACEIPESYKYTMGTPTLNLLWQATGDLTGLEGLTDP
TRHNLPSPESFRQPVKDAELELLDAMFPDDIELAQTKKFTNTWKALRLASRDRFHLFNKF
DDKFDEKRNDLEMLFEVEEKAKEEVRARVNQQAPATATPTKPQEKSLEANDNNSLAATDI
DSTPPASVPAQIPTPIPTAPITNT
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgtctccaactctcctcccaaatggaacatctgcgtcgaaaacggtcgatcagctctcc
tcccaccttcgggagattctctcctccgtcaataaaactcaccttgaacccccgttggtt
gaatccgatttcgaccctgagatattagcccgtataagattgctacggtcttctccggat
gaattataccggaattctctggatactgcatttaaaggggcgctgtatgatcttttgacc
aataacggcgctatcgataccacaacccttcccgtcttctgcaacttcttagatctttcg
ttagttttagctgagctagaaatatctggcgcaggtttaccgcttgatcttattgaagag
ctctttgactcacaaactataccatcatgcgagtgcctcttccaatatttggagtcgcgt
atcgatagggttactgcaggagttgaaggtgggaaggggaaagccctcatattgttgcgg
ctgtgcaacgagcttctcaagagactatcgaaaacagaggacacaattttttgtggccgc
atcttgatcttcctcagcaagagcttcccaattggcgaacgttccggagttaacttgaga
ggcgattttaatgtggataatgtcacggtttacgacgatattctccaagagccgccgacc
gtggtagatggaatggaactcgatatcaagaaagaggagatggaagttgatcagaagaaa
gaggggggctcgactggggcaggggaagcagacattggcagcgcccgtagccccaagagg
ctaaaggtggaagccgggcaagatacgtcccaaaaagagcccacagttctcgatgccaat
actctgtaccctatattttggtcacttcaacacgatttcgctgaccctcagcgattattc
gttaaagacaatcttgaaaaattcaaggtgggccttggggctaccatggcaaaattcaaa
aaggccgaggatgattcaatcaagaccactggaaaagttgatgtagcaaatgggcccaaa
aaggcggatgagaagaagcctggtgtttctcttggggagaagaggaagcaaattgatggt
gatgacgacgatatcaagggtgaagggtttaatccgaaatatctgacgagtcgcgagttg
ttcgaattagagatcagcgacttgacttttaggcggcatgtgcttgtacaggccttgatt
ctgatcgattttttgttaagcctgacgccacaggcgaagggaaagtggaaggacctcaaa
acaccaaacagatccgttcaatatgcgttcacattgggcctagaagatgagaaatgggca
gccacaacaaaggagcaaatactcaggagtctcgaacctgatgtgcaagggagactgttc
acacgaactattaaaacagttctgattagagaacaaaattgggttcggtggaaagcagag
agttgccacccatttgatatgccccccttgggcgatgcagacattgaggatgccaagcaa
aaagcagtaaaggcttgtgagattcctgaatcctacaaatataccatggggacaccaacc
ttgaatttgttgtggcaagctacgggcgacctaacagggctcgagggtcttacagatccg
acgaggcacaacctcccgtctcccgagtcatttagacagcccgtgaaggacgcggagctg
gaattgttggacgcgatgtttccggatgacatcgaactggcgcagaccaaaaagttcacc
aacacctggaaagcccttcgcctcgcatcccgtgaccgcttccatcttttcaacaagttt
gacgacaagttcgacgaaaagaggaacgatctggagatgcttttcgaagttgaagaaaag
gcaaaggaggaggttagagccagggtgaaccaacaagcacctgctaccgctactccaaca
aaaccccaggaaaaatctctcgaagccaacgacaacaattcgctcgcggctactgatatc
gattctacccccccagcctccgtgcccgcgcaaatcccaacaccgataccgaccgcgcct
atcacgaacacctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   INRA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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