KEGG   Tremella mesenterica: TREMEDRAFT_71017
Entry
TREMEDRAFT_71017  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K12600  superkiller protein 3
Organism
tms  Tremella mesenterica
Pathway
tms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TREMEDRAFT_71017
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_71017
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     TREMEDRAFT_71017
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_16 TPR_19 TPR_17 TPR_8 TPR_14 TPR_12 TPR_11 TPR_7 ANAPC3 TPR_9 TPR_6 TPR_15 TPR_20 TPR_21 ChAPs Sel1
Other DBs
NCBI-GeneID: 18498449
NCBI-ProteinID: XP_007002097
JGI: Treme1_71017
Position
Unknown
AA seq 1527 aa
MSTKKALKAIKAQLEEGNHEAALYQATNLLKSVDKDAPEVAQILVFRGLALTHAQKWDEA
EKSYFQAYRIDPTNPLAGHGLRKLYEKQEAWDKLCRFLEIQVQASFDSRDPDKTATALQE
LLTLRQTHGPQEKVLEILILLVSDGPLVSLLQSATPPSGTYVPFPTPLYPPPSLSVQPTL
PRELPHILHLVGSLPLALNLLIRAKSIVHTIIEQKVEAGRKRLGAGSPSEVRRNVEAEIL
GGSEGMAMVDLLEEVARHPNTDEEVRRDVEVEQFIFWRNLAASTQWVLLLPLQCSLTDQT
RSEGKPTTAQNAAPTTLRVSNVETASTFNLPEPSLFVRHTPPTVSKGEAVQKASALAEGF
VLLNVTTPGAEEAWSWVIEGTDQKDIFYDLESLNKFVLAFPSTPLSDFTEDYCRWFHLPL
PDADDEGDENPSSEALKDHSSIKKRKASRPGKTKGPNARDRRKARRLAEKEGTLAEDVDQ
EEKEELIAEMTKLLRKLPKSVFAHRVMTRVSIQEEDWQNAVTYAEKSRILLKELESERGT
TMPLTRLSIDTALGIALVPYYPPKHHARANRLLSDVLSQQMNNLEARFARARILQTEGKW
AEAREEFQIMLDSGPEEREAVAAREEIGWCLVNEDKLSEGRDVLEEVVQRRETRKEQDSN
DDEAYARARGWYRLGRCEWLIGDEENRQHAEEWFMASCRALPSYAPAYTSLGISYESNIP
PDEDRALKCFQKAFELDATEVEAARRLVIGYADDDEWALVRGIAMRVMEGEGGVEGIAGG
DVLNAKGRFAPKNGWAWKALGSTEMHYKKYAEATQAFQIALRAEPSDVSTWILLGTAYLK
LGRHMAALKALSHALELDPKAWVAQYNIGETYHQLGAFDKAIEAYQSVLDLEPPSKIGVI
ASLAQSTLSLGRQASSGGFRQRARNAFHDTVTLAADVLRSKQGHRPWTWKTIGDAAFELA
SLETTMEDAQTSATVLKPILKLLVEDDTDRHASVTGLGHTSIFVYAYRAWLLSTDLRVSN
IAIYDLASALHALAISLPGGTDLRTCCLKAAIVIVRKALEHDASDERLWNALGVISSSAG
PALAQHAFIISLELYSKDPIAWTNLGYLYLNLDDLNLASECFVKAQILDPDYAQAWYGQG
IIAYRSFNQTHATELFAHSVTLAGGSLLEANIAHALTIFLPFLDPSSSISKSTSTLHQPL
FALRSYIHNRPKDPMALNLYALMCERIGLSSESIDALVSSAQLLEEEYESTESPQTEHLY
IVVLCNLARVRLSTGNYTEALEGFKNCLELIDGKNGDEESDMRVQCLLGQGISEFWLDKV
DQSLESFEKCLEICQGKEKREEVIVLLARTLWGMGEDGKEVAKDHLMDCLPTTSSQILIA
LTVISLLLSDNDLTSTCLSTLSSLPLQSDDHIPLVLSSHQLIQDNPEGALTILEQAVQHH
PTSLQSRIRLARLLLALGRKEDVSSLLSRWPGQLREDSSLEGQRETLLGIATMDVGRIQR
GVMIRPWKEEGWSGLTYGRGKGYKWAV
NT seq 4584 nt   +upstreamnt  +downstreamnt
atgtccacaaagaaggcactcaaggccataaaagcccagctggaagagggcaatcacgag
gcagcgctgtatcaggcaaccaacctgctgaaatcagtggacaaggacgctccagaggta
gcccaaatactggtctttcgtggtttggctctcacacatgctcagaaatgggacgaggct
gaaaagtcatactttcaagcataccggattgatcctacaaaccccttagcagggcatggt
ctacgaaagctatacgagaagcaagaggcttgggacaagctctgcaggttcttagagatt
caggtacaggcatcttttgattcaagagatcccgacaaaacggcaactgctttgcaagaa
ctgcttaccctccgtcagacacatggtcctcaagaaaaggtcttggagatactcatactc
cttgtgtcagatggacccctcgtatctctattacaatctgctaccccaccttccggcacc
tatgtcccttttcccactccactataccctcccccttctttgtctgtacaacccactttg
cctcgagaattaccacatatcttgcatctggtaggatctctccccttagctctcaatctc
ctcattcgagcaaaatcaatcgttcacacaatcatcgagcagaaggtcgaggcaggacgg
aaaagactaggtgctggatctccaagcgaggtcagacggaatgtggaggcggagatcttg
ggagggtcagaaggaatggctatggtggatctattggaagaggtagcccggcatccgaat
acagacgaggaagtcagacgagatgtggaagtggagcaatttattttttggcgtaaccta
gcagccagtactcagtgggttttattactacccttacaatgctcactcactgatcaaaca
agatccgaaggaaagcccactacagcacagaatgccgctccaacgaccttgcgcgtatcc
aatgtggagactgcatccactttcaacctaccagaaccgagtcttttcgttaggcatact
ccgcctaccgtcagtaaaggcgaggctgtccaaaaagcttcagctctagccgagggcttc
gtcctgctcaatgtcacgacgccaggagctgaggaggcttggtcatgggtcatagaaggt
actgatcaaaaggacatattttacgatctagaaagtctgaataaattcgttctcgctttc
ccctcgactcccttgtcagacttcactgaagactattgtcgttggttccatctacctctg
cccgacgcagacgatgagggggatgaaaacccgtcttcggaggcgctgaaagatcattcg
agtattaagaagcgaaaggcttcaaggcctggcaagacaaaaggtcccaatgccagagat
cgacgaaaggctcgacgacttgcggagaaggagggtaccctagcggaggacgttgatcaa
gaagagaaagaggagttgatcgctgaaatgacgaaactgctgagaaaacttcccaagtct
gtcttcgctcaccgagtgatgacgagagtatcgatacaagaagaagattggcagaatgct
gtcacctacgctgaaaaatcgaggattttgttaaaagagctcgagagtgagcgtgggacc
acaatgcccctgacacgtctctctattgacactgcactcggtatcgctcttgtaccttac
tatccaccgaaacaccatgctagagccaatcgtctcctctcggatgtcctcagccaacaa
atgaacaatctggaagctcgctttgcccgtgctagaattttgcagactgaggggaaatgg
gcagaagcgcgagaggaattccagattatgctggattctggtcctgaagagagggaagcg
gtcgctgcacgtgaagagatcgggtggtgtttggtcaatgaggacaagctatcagaagga
cgtgatgttctcgaggaggtagtacaacgtcgagaaactcggaaagagcaggacagtaat
gacgacgaggcttacgctagagcaaggggttggtatcgactcggaaggtgtgaatggctc
atcggagacgaggagaatcggcagcatgcagaagaatggttcatggcttcatgtcgtgct
ctaccatcctatgctccagcttacacttcccttggaatctcctacgaatctaacatacct
ccggacgaagatcgtgctttgaagtgttttcaaaaggctttcgagctggatgctactgaa
gtggaagctgccaggagattggtcattggttatgccgacgatgatgaatgggctttggta
aggggtatagctatgagagttatggaaggtgaaggaggggtagaagggatcgcaggtgga
gatgttttaaatgctaagggacgatttgcaccaaaaaatgggtgggcttggaaagctctg
ggatcgaccgagatgcactataagaagtatgctgaggcaactcaagccttccaaatagct
ttacgagcggaaccatcagacgtttctacttggatcctgctcggtaccgcttatctcaaa
ctcggtcgtcatatggccgcgctcaaagctctctctcacgctctcgaactggatcctaaa
gcttgggtcgcacaatataacattggagagacataccatcagcttggtgccttcgacaag
gccattgaagcttatcaatctgttctcgatttggaaccaccctcgaaaattggtgtcata
gcttctcttgctcaatcaaccctgtccctcggtcgacaagcttcctcgggaggattcaga
caacgagcccgcaatgcctttcacgacactgtcacattagccgcggatgttcttcgatcc
aaacaaggtcacagaccatggacgtggaaaacgataggtgatgcggctttcgaactggcc
tcactggaaactacaatggaagacgcgcaaacttctgcgaccgtactgaaacctatctta
aaattgttggtggaagacgatacagatcgacacgcttcagtgacaggtctaggacacacc
tcgatcttcgtatacgcttaccgtgcttggcttttgtcgaccgaccttcgcgtttcgaat
atcgccatctacgatctggcttctgccttacatgctttagccatctccctacctggaggc
actgatctgagaacatgttgtctgaaagctgcaattgtgattgtgcgcaaagcactcgag
catgatgcaagtgacgaaagactttggaatgctttaggtgtaatatcatcttccgcagga
cccgcattggctcaacacgcattcatcatttccctcgaattatattcgaaagatccgata
gcatggaccaaccttgggtatttatacctcaatctcgatgatttgaatttagcaagtgaa
tgttttgtaaaggctcaaatactcgatccggattatgctcaagcatggtatggtcaagga
attatcgcgtatcgttcatttaatcaaacccacgcaactgagttattcgctcattccgtt
actttagcgggtggtagtctactcgaagcgaatatagcacacgctctcaccatcttcctt
cctttcctcgatccatcctcgtcgatttcgaagtcaacatcaacattacatcaaccactt
ttcgctcttagatcatacatccacaatcgaccaaaagatccaatggctctaaacctatat
gcgttgatgtgtgaacgtatcggtctttcatcagaatctatcgatgcgttagtatcttct
gctcaattgttagaagaagaatatgaatctaccgaatctcctcaaacggaacatctatat
atcgtggtattatgtaatcttgcaagagttcgattatccactggaaattacaccgaagct
ctggaggggttcaagaattgtttggagctgatagatgggaaaaatggagatgaagagagt
gatatgagagtgcaatgtttgttaggacaaggtatttccgagttttggttagacaaagtg
gatcaaagtttggaaagttttgaaaaatgtttggagatttgtcaggggaaagagaaaagg
gaagaagtgatcgttttgttagctaggactttatgggggatgggggaagatgggaaggaa
gtggcaaaagatcatttgatggattgtctaccaactacctcgtctcaaatcctcatcgct
ctcacggtcatttccctcctcctttcagacaatgacctcacttcgacatgtctctccacc
ctctcctcccttcctcttcaatccgacgaccacatccctctcgtcctctcctcccaccag
ctgatccaggataatccggagggagctttaacgatattagaacaagccgtccaacaccat
cccacttctcttcaatctaggatacgactagcgagacttttactggctttggggcggaaa
gaagacgtatcatcacttctttctcgatggccaggtcagttaagggaggactcaagtcta
gaaggtcaaagagagacgttattgggcatcgcgactatggacgtgggaagaatacagaga
ggtgtcatgatccgtccgtggaaggaagaaggatggtcagggttgacgtatggtcgtggg
aagggttataagtgggcggtgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (55)   

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