KEGG   Thermosediminibacter oceani: Toce_0099
Entry
Toce_0099         CDS       T01289                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
toc  Thermosediminibacter oceani
Pathway
toc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:toc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Toce_0099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:toc03400]
    Toce_0099
Enzymes [BR:toc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Toce_0099
DNA repair and recombination proteins [BR:toc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Toce_0099
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD Helicase_C CarD_TRCF_RID ResIII ERCC3_RAD25_C RecG_dom3_C AroM AAA_22 AA_kinase DUF1474 BTRD1
Other DBs
NCBI-ProteinID: ADL06890
UniProt: D9RZJ2
Position
102939..106472
AA seq 1177 aa
MDIDFLSREITEFNKLAGDLEKGLSGLFAYGLSDSQRAFLIAAVRKRFPKPVLVVTADSL
DARKLADDLAYFLGTEDVEMFPASSVIPYETAARSPELTAQRLKVMESLVTGKQPVVVSP
LQALTNRMMPPDVVKKFTIKLRVGDSIPLEEAVLKLSFMGYERVDTVEGRGQFAVRGGIL
DVYPLTAENPYRMEFFGDEVDSIREFSVEDQRSMDKLEEVFIFPAREVVFDRETAKNAAI
SIARELEDRKKAFELTGSAQIAAQLEEKILEHIEKLENGQFFESAQHYISHFYSNLSALT
DYFTLPPLVILVEPGKIVESTKNSAFEIEETYKGLLEKGEVLPSVSEMYFTPFDILENLR
KSKTVYISMLPRIPGEFEIGGLYSFQFRSVTSFHGKVDLLAEEVAHFKKKGYRVVILSGT
GERGKHLSRTLREKALDAAFYGTLGDELLPGQVVITPGSLEKGFQIPEIKFALISDLDVY
GQPKIKQKRPKVRAGGKRITSIDELSAGDYVVHITHGIGRYLGIETLEVEGHKKDYFAIQ
YAGGDKLYVPTDQVEMLHKYVGPEDRPPKLNKLGSSEWAKAKTRVKESVKEMAKELLELY
AARQAMKGFAFSPDTVWQKEFEDLFPYEETPDQLTAIEEVKRDMESDKCMDRLLCGDVGY
GKTEVALRAAFKAVMDAKQVAVLVPTTILAEQHYRTFSERFAPFPVRVEVISRFKSKAEQ
KAIIKDLKNGAIDIIIGTHRLLQKDVKFKDLGLLIIDEEQRFGVSHKEKIKQLKKNVDVL
TMTATPIPRTLHMAMTGIRDMSVMETPPENRYPIQTYVVEYSDSLIRDAIMRELSRGGQV
YYVYNRVNTIYEEAKRLSALVPEARIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIE
TGLDIPNVNTLIVISADRFGLSQLYQLRGRVGRSSTQAFAYFTYKKDKTLSEAAEKRLAA
IRDFTEFGAGFKIALRDLEIRGAGNILGTEQHGHMMTVGYDLYCKLLAEAVRELRSEPEP
EEVQPVIDLKLSAYIGDDYIPNAAQKIDIYRRIAAVETLEEADDLEEEIEDRFGDIPEPT
RNLLFVARLKVLAKKLKLSSIIQQNDIITFKFQSANALSPEQFFALSAAFQNRVNFLGTT
VPAFTFKVRNLSGYKLFLRIQKLLEEMVEFLQLPSNE
NT seq 3534 nt   +upstreamnt  +downstreamnt
atggatatagattttttatcgagagaaataaccgaatttaataaactggccggcgacctg
gaaaaggggctgtccgggctcttcgcctacggactttccgattcccagagggccttcctg
atagccgcggtaagaaaaagattcccgaaacccgtgctggtggttaccgccgattcgctg
gacgccaggaagctggccgacgacctagcgtattttctggggaccgaagacgttgagatg
ttcccggcgagctccgtgataccttacgagaccgccgccaggagcccggaattaactgcg
caaaggctgaaggtcatggaatccctggtcaccggcaaacaaccggtggtcgtatccccg
ttgcaggcccttaccaacagaatgatgccacccgatgttgttaaaaaattcacaatcaag
ctccgggtgggagattcaataccactggaagaggcggttttaaagctttccttcatggga
tacgagagggtggacaccgtagaaggcaggggccagttcgccgtgcggggcggtatcctg
gatgtgtatcccctgacggcggaaaatccctaccgcatggagtttttcggtgatgaggtg
gactctatccgggaattttcggtggaagaccagcgatctatggataagctggaagaggta
tttatattccccgcccgggaagtggtgttcgacagggaaacggccaaaaacgccgccatc
agcatagcccgagagctagaggacagaaaaaaggctttcgagcttacggggtccgcccaa
atagccgcacagctggaggaaaagatactagaacatatagaaaagctggaaaacggccag
ttttttgaatcggcccagcattacatttcccatttttattcgaacctttcggctctgacc
gattattttactttgccaccgcttgtgatactggttgagccgggaaagatcgtagagagc
accaagaattcggcttttgaaatagaagagacctacaagggccttctggaaaagggcgag
gtgctgccttcggtttcggaaatgtattttacaccttttgacatcctggaaaatctgagg
aagtcgaaaaccgtttacatttccatgctcccgcggattccgggagaatttgaaataggc
ggtttatactccttccagttccgttcggttacctccttccacggcaaggtggacctgctg
gcagaggaggtagcgcattttaagaaaaagggataccgcgtcgttatcctttccgggacc
ggcgagaggggaaaacatctcagcaggactctgagggaaaaagcacttgatgccgccttt
tacggtactttgggtgacgaactgctgccgggccaggtggtaataactccgggttctctg
gaaaaggggtttcagattcccgagataaagttcgcgctgatttccgatctggacgtctac
ggacaacccaagataaagcaaaaaaggccgaaggtgcgcgccggaggcaaaagaattact
tcgatcgatgagctttcggccggggattatgtcgtgcacataacccacggaatcggcagg
tacttggggatagagaccctggaggtggaggggcacaaaaaggactacttcgccatccag
tacgccggcggggataaactttacgtacctaccgatcaggtggagatgctccacaaatac
gtgggacccgaagacaggccgccgaagttgaataaattggggagcagcgagtgggccaag
gccaaaacccgggtcaaggaatcggtaaaggagatggcgaaagaactgctggagctttac
gccgcccggcaggccatgaagggttttgccttttctcccgatacggtgtggcagaaggaa
ttcgaggacttgtttccgtatgaggaaacgccggaccagctcaccgccatcgaggaagta
aaaagggatatggagagcgacaaatgcatggataggctcctctgcggcgacgtgggctac
ggcaagaccgaagttgccctgagggcggctttcaaggcggtcatggatgcgaagcaggtg
gcggtgctggtacccaccaccatcctggccgagcagcactaccgcaccttttccgagaga
tttgcaccttttccggtaagggtcgaggtgataagtcgttttaaatcaaaggccgaacag
aaggctataataaaagacctgaagaacggtgctatagatataattataggcacccacagg
ctgttgcagaaggacgtgaagttcaaggatttagggctccttatcatagatgaagagcag
aggttcggcgtctctcacaaggaaaagataaaacagctcaagaaaaacgtggatgtgctt
accatgaccgcgactcccataccgcggacgctgcacatggctatgaccggtataagggat
atgagcgtcatggagactccccccgaaaaccgctaccccatacaaacctacgtggtggag
tacagcgactcccttataagggacgccataatgagagaactttcaaggggagggcaggtt
tattacgtctacaatagagtaaataccatctatgaagaggctaaaagactctcagccctg
gtgccggaggccaggatcgcggtggcccacggacagatgcatgagaatgagctggaagag
gtgatgatggatttttatgagcaccggtacgacgtgctggtgtgcaccaccatcatcgag
acggggttagacatacccaatgtcaatacccttattgtaatatcggccgaccgatttggt
ctttcccagctttatcagctgcgggggcgcgtcggcaggtccagcacccaggccttcgcg
tactttacttacaagaaggataaaacgctcagcgaggcagcggaaaagcgcctggcagcc
ataagggatttcaccgaattcggcgccgggttcaagatagcactgagggacttagagatc
cgcggtgccggtaatatcctcggcaccgaacagcacggtcacatgatgaccgtgggttac
gacctttactgtaagctcctggccgaggccgtccgggagctcaggagcgaacctgagccg
gaagaggtccagcctgtaatagacctcaagctgagcgcttacatcggagacgattacatc
ccgaatgccgcccagaagatagatatataccggcgcatcgctgcggtagagaccctggaa
gaggccgacgacctggaagaagaaatagaagacaggttcggggatataccggaacctacc
aggaatcttttatttgtagcgcgcctcaaagttctggccaaaaaattaaaattatcgagt
attatccagcaaaatgatataataactttcaagtttcagtcggctaatgctctatcgccg
gagcagtttttcgccctcagcgccgcctttcaaaatagggtgaattttcttggcactacg
gtgccggcctttacttttaaagtaagaaatctatcggggtacaagctgtttttgcggatt
caaaagttgctggaagagatggttgaatttctacaacttccctccaatgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (103)   
   KEGG ORTHOLOGY (1)   
   RefGene (100)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (123)   

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