KEGG   Thermosediminibacter oceani: Toce_0111
Entry
Toce_0111         CDS       T01289                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
toc  Thermosediminibacter oceani
Pathway
toc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:toc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Toce_0111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:toc03021]
    Toce_0111
   03400 DNA repair and recombination proteins [BR:toc03400]
    Toce_0111
Enzymes [BR:toc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Toce_0111
Transcription machinery [BR:toc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Toce_0111
DNA repair and recombination proteins [BR:toc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Toce_0111
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RnfC_N Peptidase_M23
Other DBs
NCBI-ProteinID: ADL06902
UniProt: D9RZK4
Position
115753..119382
AA seq 1209 aa
MVRPVKVGGRTRWSFAKIEEVRDLPYLLEIQKNSYEWFLKEGLREVLQEFSPIEDFTGNM
VLEFLDYSLDNNPKYSVDECKERDVTYAVPLKVRVRLINKETGEVKEQDVFMGDFPLMTE
NGTFIINGAERVIVSQLVRSPGVYFDRQIDKNGRALYMGTIIPNRGAWLEMETDSNEVIY
VRVDRTRKIPITVLLRALGYGTNAQIIELLGEDEKILRTLEKDNTENQEEALLEIYKRLR
PGEPPTVENARALLESLFFDPKRYDLANVGRYKFNKKLRLRNRIVGKIAAENVEDPNTGE
IILKKGEKITRKTAETLESLRINEIKVMVDEDRVVKVIANGYNDGDGPDVFPTEKYITVE
DIVASINYLLNLSYGIGDVDDIDHLGNRRVRSVGELLQNQFRIGLARMERVVKERMTIQD
VDAITPQGLINIRPLVAAIKEFFGSSQLSQFMDQTNPLAELTNKRRLSALGPGGLSRERA
GFEVRDVHYSHYGRMCPIETPEGPNIGLISSLSTYARVNQYGFIETPYRKVDKERGVVTN
EVEYLTADEEEEFIIAQANVPLDEEGRFVQKRVTARYKDDIVVVPAEEVDYMDVSPKQLV
SVATALIPFLEHDDANRALMGANMQRQAVPLITTEAPLVGTGIEWKAALDSGVMIVAKNS
GVVERVTAREIVIRRDSDNGLDVYKVHKFMRSNQGTCINQRPIVKKGDRVEAGQPIADGP
STDHGELALGKNVLVAFMPWEGYNYEDAILISERLVRDDVFTSIHIEQYEAEARDTKLGP
EEITRDIPNVGEDALKDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFG
EKAREVRDTSLRVPHGEYGIVVDVKVFSRENGDELPPGVNQLVRVYIAQKRKISEGDKMA
GRHGNKGVISRILPVEDMPYLPDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKALGWH
VATPVFDGATEEEIFECLRKAGLPEDGKIELRDGRTGEPFDKKVTVGYMYMLKLAHLVDD
KIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQELLTVKSDDVMGR
VKTYEAIVKGENVPEPGIPESFKVLIKELQSLCLDVKILSEDAQEIEIKDADEYEETETL
DVNMEGLEDQGETPVKEEEPDEDLEEEEPEEDIYEELSEEDRELTRDLGLDEEDFNGQFD
FDESEIEDY
NT seq 3630 nt   +upstreamnt  +downstreamnt
atggttcgtcccgtaaaagtgggaggacgcacccgctggagtttcgccaagatcgaggaa
gtaagagacctcccttacctgttggagatacagaagaattcatacgagtggtttttaaaa
gaaggtctgagagaagttctgcaggagttttctcccatcgaggattttaccggcaacatg
gtgctggagtttctcgattatagcctcgacaataaccccaagtactcggtggatgagtgt
aaggaaagggacgttacatacgccgttcccctcaaggtccgcgtaaggctgataaataaa
gagacgggcgaggtaaaggaacaggacgtgttcatgggtgacttcccgctcatgactgaa
aacggtacctttataataaacggagccgagagggttatcgtcagccagctcgtgcgttcc
cctggtgtgtacttcgaccggcagatcgacaagaacggcagggccctctacatggggacc
attatccccaaccgcggtgcctggcttgaaatggagaccgattccaacgaggtcatatac
gtgagggtcgacaggacccgaaagatccccataaccgtgctcttaagggctctcggttac
ggaaccaacgcgcaaatcatcgaacttttaggcgaagacgaaaaaatcctcaggacttta
gaaaaggataacactgaaaatcaagaagaggcgctcctcgaaatatacaagaggctgaga
cccggagagccgcccactgtggaaaacgcaagagctctcttggagtcgttgtttttcgat
cccaagcgctatgatcttgcgaacgtgggcaggtacaagttcaacaaaaaactgaggctc
aggaaccgtatcgtagggaaaatagcggcggaaaacgttgaggaccccaacaccggagag
attattctcaaaaaaggtgaaaaaattaccagaaagacagccgaaacccttgagtccctt
agaataaacgagatcaaggtaatggtcgatgaagacagggtcgtaaaagtcatagccaac
ggatacaacgacggcgatggtcccgatgtttttcccacggaaaaatatatcaccgttgaa
gatatagttgcttccataaactacctcctgaatctttcctacggtatcggtgatgtggac
gacatcgaccatttgggcaaccgcagggtgaggtcggtaggcgaacttttgcaaaaccag
ttccgcatagggcttgcccgaatggagcgggtcgtcaaagagcgcatgaccatccaggac
gtggacgccataactccgcagggactcatcaacataaggcccctggtagcagctataaag
gagttcttcggcagcagccagctgtcccagttcatggaccagaccaaccccttggcggag
cttactaacaagagaaggctcagcgccctcgggcccggaggcttgagccgcgagagggcg
ggcttcgaggtaagggacgtacactattcccactacggccgcatgtgtcctatcgagact
cctgaaggccccaacatcgggctcatcagctccctcagcacgtatgcccgggtaaaccag
tacggatttatagagacgccttaccgcaaggtcgacaaagaaagaggcgttgttaccaac
gaagtagaatacctgaccgccgacgaggaagaggaattcatcatagctcaggccaacgtg
cccctggatgaagagggcaggttcgtccaaaaaagggttacggccaggtacaaggacgac
atcgtggtagttccggccgaagaagtcgattacatggacgtatcgccgaaacagctggtc
agcgtagccaccgctctgattcctttcctggaacacgacgacgccaaccgagccctcatg
ggcgctaacatgcagcgccaggcggttccccttataaccacggaagctccgctggtgggt
acgggaatagagtggaaagccgctttagattctggcgtcatgattgtggccaagaattcg
ggcgttgttgaaagggtaacggcaagagagattgtaatccgcagggatagcgacaatggc
cttgatgtgtataaagtgcataaattcatgaggtcaaaccaggggacctgcatcaaccag
aggcctatagtgaaaaagggcgatagggttgaagcgggtcagcccatagccgacggtcca
tccacggaccacggcgaactggcgctgggcaagaacgtgctggtggccttcatgccctgg
gaaggttacaactacgaggacgccatcctgatttcggaacggctggtgagggatgatgtt
ttcacctcgattcacatagagcagtacgaggctgaggcccgggacaccaaactaggcccc
gaggagatcacaagggatatacccaacgtaggcgaggatgccttgaaggacctggacgaa
aggggaatcatccgaataggcgccgaggtccgggccggggacatcctggtgggcaaggtg
actcccaagggcgaaactgaactcaccgccgaggaaaggctgctcagggccatattcgga
gaaaaggcgagggaagtcagggatacttccctcagggttccccacggagagtacggtatc
gtcgttgatgtcaaagtgttcagcagggaaaacggagacgaactgccgccgggagtcaac
caactggtcagagtttacatagcccagaagaggaagatctccgaaggcgacaagatggcc
ggccgccacggaaataagggtgtaatttcaaggatattacccgtggaagacatgccgtat
ctacccgatgggacgccggtagatatcgtgctgaaccccctgggtgtgccttcccgaatg
aacatcggccaggtgctggagacgcatctcggatgggcggcaaaggcgctgggatggcat
gtagccacgccggttttcgacggtgcgaccgaagaagaaatattcgagtgcctcaggaag
gccggtttgcccgaagacggcaagatagaactaagggacgggcgcacgggcgaacccttc
gataaaaaggttacggtgggctacatgtacatgctgaagttggcccacctcgtggatgac
aagatccacgccaggtctacgggtccatactcgttggttacccagcagccgctgggcggt
aaagcccagttcggcggccagaggttcggtgaaatggaagtatgggccctggaggcgtac
ggggcaagctataccttacaggaactcctaacggtgaaatccgacgacgtgatgggccgc
gtaaagacctacgaggctatagtaaagggcgagaacgtgccggaaccggggatacccgaa
tccttcaaggtgcttattaaagaactgcagtccctgtgccttgacgtgaagatactttcc
gaggacgcccaggagatcgagatcaaggacgccgacgaatacgaggagactgaaaccctc
gatgtgaatatggagggtctggaagatcagggagaaacgcctgtaaaagaagaagaaccc
gacgaagacctggaggaagaagaaccggaagaagacatatacgaggaattaagcgaggaa
gacagggaacttacacgggacctgggcttggacgaagaggattttaatggtcaatttgac
ttcgacgagagtgagatagaagattattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (51)   

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