KEGG   Thermosediminibacter oceani: Toce_1553
Entry
Toce_1553         CDS       T01289                                 
Name
(GenBank) 23S rRNA m(5)U-1939 methyltransferase
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
toc  Thermosediminibacter oceani
Brite
KEGG Orthology (KO) [BR:toc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:toc03009]
    Toce_1553
Enzymes [BR:toc01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     Toce_1553
Ribosome biogenesis [BR:toc03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Toce_1553
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Met_10 Methyltransf_15 Methyltransf_25 MTS Cons_hypoth95 PrmA Methyltransf_11 Methyltransf_32 Ubie_methyltran Methyltransf_4 PCMT
Other DBs
NCBI-ProteinID: ADL08297
UniProt: D9RY73
Position
complement(1530476..1531828)
AA seq 450 aa
MLKKRDRIAIDITAMAHEGQGVGRVDGLAVFVEGALKGERVLAVVEKVSKNYAIARAEEI
ISPSPDRIIPRCPHADECGGCSLQHLSYKGQLEFKTQKVRDSLERIGRIYTTVFDTIGME
DPWKYRNKAQYPVGKKDYRPALGFYMKRSHDLVPIEGCLIQHELSWRAAEVVRDWMEKFR
VSIYDEINHKGLIRHVVTRIGAKTGEVMVVLVINGREVPHLRELLGALEKNVEGLKSVYL
NVNTKKTNVIMGDENILVYGEPHIIDFIGEIKFTLSPNSFFQVNPVQVEVLYKKVMEYAG
LTGEETVIDAYCGIGTITLFLAGKARMVYGIEVVPQAVMDARNNALLNGIENVEFIEGAA
EEVMPQLVERGIRADVIVMDPPRRGCDEKLLDAAVKMNPPRMVYVSCNPATLARDLRYLE
DRGYRTELVQPVDMFPFTHHVECVALIKKT
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgcttaaaaaaagagatcgaatcgcaatagatataaccgccatggcccatgaaggacag
ggggtggggagggtagacggccttgcggtatttgtcgaaggggcgttaaagggtgaaagg
gttctggcggtagtggaaaaggtttcaaaaaactacgctatagctcgggcggaggagatc
atatccccgtcgcccgatcgaatcatcccccggtgtccccatgctgacgagtgcggtggg
tgctctctccagcacctgtcgtataaggggcagctggagtttaaaacgcaaaaggttagg
gacagcctcgagaggataggccgaatatacacgacagtgtttgataccatcgggatggaa
gatccatggaaatatagaaataaagcccagtatccggtggggaagaaggactaccggccc
gcattaggattttacatgaagaggagccatgacctggtccccatagaaggttgtcttatc
cagcacgaactgagctggcgggcggcagaggtggtccgggattggatggaaaaattccgg
gtatcgatttacgacgagataaaccacaaggggcttatcagacacgtggtgaccagaata
ggggccaaaaccggtgaagtaatggtggtgctggtaattaacggaagggaagtgcctcat
ttaagggagctactcggcgcgttggagaaaaacgtagaaggccttaaaagcgtttatctt
aatgttaacacgaagaagacaaatgtgattatgggcgatgaaaatatactggtctacggc
gaacctcatattatcgactttataggagaaataaaattcaccctttcgcccaactccttc
ttccaggttaacccggtgcaggtggaggtactttataaaaaagtgatggaatacgccggg
cttacgggcgaagagaccgttatcgatgcctactgcggtataggtacaataactttgttt
ttggccgggaaggcaaggatggtttacggcatcgaagttgtaccccaggctgtaatggat
gccaggaataacgctttattgaacggaatagaaaatgtagaattcattgaaggagcggct
gaagaagtaatgccccagctggttgaacggggtattagagccgatgtaatagtgatggat
ccgcccaggcgtgggtgtgatgaaaagctactggatgcggccgtaaaaatgaatcctccc
cgcatggtatacgtatcgtgcaatcccgctactcttgcgagagacttaaggtacttagaa
gataggggatacaggaccgaattagtacaacccgtagacatgttccctttcacacatcac
gtggagtgcgtggcattgatcaaaaagacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (38)   

Download RDF
DBGET integrated database retrieval system