KEGG   Thalassiosira pseudonana: THAPSDRAFT_27365
Entry
THAPSDRAFT_27365  CDS       T01078                                 
Name
(RefSeq) serine threonine protein phosphatase
  KO
K06269  serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    THAPSDRAFT_27365
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tps01009]
    THAPSDRAFT_27365
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_27365
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_27365
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_27365
Enzymes [BR:tps01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     THAPSDRAFT_27365
Protein phosphatases and associated proteins [BR:tps01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    Catalytic subunits
     THAPSDRAFT_27365
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     THAPSDRAFT_27365
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     THAPSDRAFT_27365
Spliceosome [BR:tps03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    THAPSDRAFT_27365
SSDB
Motif
Pfam: Metallophos STPPase_N
Other DBs
NCBI-GeneID: 7444015
NCBI-ProteinID: XP_002288703
JGI: 27365
UniProt: B8BX38
Position
3:complement(377662..378884)
AA seq 314 aa
MGGVTLLSDPVDVIIDKLLSVRGARPGKQVDLAEAEVKMLCLRSRDLLISQPMLLELEAP
IKICGDVHGQYYDLLRLFEYGGFPPEANYIFLGDYVDRGKQSLETICLLLAYKIKYPENF
FVLRGNHECASINRIYGFYDECKRRFGIKLWKTFTDCFNCLPCAAVIDEKIFCTHGGLSP
ELTSLDQVKRIVRPTDVPDTGLLCDLLWSDPDKDIDGWGENDRGVSFTFGEDIVAQFLNR
HDLDLICRAHQVVEDGYEFFARRQLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKP
AEKRQRFAYQGGNA
NT seq 945 nt   +upstreamnt  +downstreamnt
atgggaggcgtcaccctcctctcagaccccgtcgacgtaatcatcgacaaactcctttcc
gtccgcggcgcccgcccaggcaagcaagtcgacctcgccgaagcggaggtcaagatgctc
tgtttgcgttctcgcgatttgctcatctctcagcccatgctgttggaattggaggctccc
atcaagatttgcggggatgtgcacgggcagtactacgatttgctccgattgttcgagtat
ggcggcttcccccccgaggccaactacatcttcttgggcgattacgtcgaccgtggcaag
cagtctctcgagaccatttgcctcctgttggcgtataagatcaaataccctgagaacttt
ttcgtcctccgcggtaatcacgagtgtgcatccatcaaccgcatttacgggttttacgat
gaatgcaagcgtcgatttggcatcaagctttggaagacatttacggattgcttcaactgc
cttccctgcgcggcggtgattgatgagaagatcttttgtactcacggggggttgagtccg
gagttgactagtttggatcaagtcaagcgtatcgttcgtccgacggatgtgcctgatacg
ggattgttgtgtgatcttctttggagtgatcctgacaaggacattgatgggtggggggag
aatgaccgtggtgtctccttcacttttggggaggatattgtggcacagttcctcaacagg
catgatttggacttgatctgtcgtgctcatcaggttgtggaggacgggtacgagttcttt
gcgaggaggcagttagtgacgttgttttcggctcctaattattgtggagagttcgataat
gccggggcgatgatgagtgtggatgatacgctgatgtgtagctttcagattttgaagcct
gctgagaagaggcagaggtttgcttatcagggcgggaatgcataa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (247)   
   KEGG ORTHOLOGY (1)   
   RefGene (242)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (261)   

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