KEGG   Thalassiosira pseudonana: THAPSDRAFT_3459
Entry
THAPSDRAFT_3459   CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K12195  charged multivesicular body protein 6
Organism
tps  Thalassiosira pseudonana
Pathway
tps03250  Viral life cycle - HIV-1
tps04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    THAPSDRAFT_3459
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    THAPSDRAFT_3459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tps04131]
    THAPSDRAFT_3459
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tps04147]
    THAPSDRAFT_3459
Membrane trafficking [BR:tps04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    THAPSDRAFT_3459
Exosome [BR:tps04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   THAPSDRAFT_3459
  Exosomal proteins of other body fluids (saliva and urine)
   THAPSDRAFT_3459
SSDB
Motif
Pfam: Snf7 Hydantoinase_B ADH_zinc_N Sigma70_r1_1
Other DBs
NCBI-GeneID: 7448757
NCBI-ProteinID: XP_002288835
JGI: 3459
UniProt: B8BXV1
Position
3:complement(1017257..1018033)
AA seq 258 aa
MMMTTNCVNDSSRTALRRPPTASRQLLTDRAQRTPMGAKNSKPKPSSNKGGTITPTDRAI
LDLKNSRDRLTKYRTKLDLDTTKLGVRAKTLHAEGNTPYALKLLKLRKYKTQEADRVEEQ
LLTVLRMVDKISEKQNEQDVVVAMKRGKEALQILHNEMGIDDVLDLMDEIRDQDEVEKRI
NELLGEEGIRVVEDMGDEDILLELEQLEEDVRLETEAATAKIQKEDNVVLPAAPSKPLPA
VENPTIGGGRKQKVAVAS
NT seq 777 nt   +upstreamnt  +downstreamnt
atgatgatgacaacaaactgcgttaacgacagttcccgtacagcgcttcgccgaccgccg
acagccagccgacagctgctgaccgaccgagcacaacgaacaccgatgggagcaaagaac
agcaaaccaaagccttcctccaacaaaggaggcaccataacaccaactgatcgtgctatc
ctcgatctcaaaaactctcgtgatcgtctcacgaaataccgaaccaaacttgacttggac
acaacaaagcttggtgtacgtgccaagactcttcatgcagagggcaatacgccttatgca
ctgaagctattgaagctacgaaaatacaaaacgcaagaagcagatcgtgttgaagagcag
ctactgactgttctccgtatggtggacaagattagtgagaaacaaaatgagcaagatgtg
gtagttgctatgaaaagggggaaggaggctttgcaaatactgcataatgaaatgggaatt
gacgatgtgttggatttgatggatgaaatacgtgatcaagatgaagtggagaagcgaata
aatgaacttctcggtgaagagggaataagagtagtagaggatatgggagacgaggacatt
ctattggagttggaacagttggaggaggacgtccggctggaaaccgaagcggcaactgca
aagatacaaaaagaggacaatgtggtgttgccagctgctccctcaaaaccattgcctgcc
gtggagaacccaacaataggagggggaaggaaacaaaaggttgcagtggcatcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (64)   

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