KEGG   Thalassiosira pseudonana: THAPSDRAFT_34591
Entry
THAPSDRAFT_34591  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
tps  Thalassiosira pseudonana
Pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_34591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_34591
Spliceosome [BR:tps03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    THAPSDRAFT_34591
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    THAPSDRAFT_34591
SSDB
Motif
Pfam: PRP38
Other DBs
NCBI-GeneID: 7451139
NCBI-ProteinID: XP_002291343
JGI: 34591
UniProt: B8C555
Position
6:complement(347891..348391)
AA seq 167 aa
MANVTDPLAHSVHGTNPQNLVEYITRQKIYDSLYWKEECFGLSASDVATKATDLKALGGS
YGGNNKPTRFLCLALKLLQIQPEEGIVEEFLENEEFKYVRALGAFYLRLTGRPAEIYELI
EPLFNDFRKLRFRESTGWKVTYMDELADELLTSDRYCGIALPHLPKR
NT seq 501 nt   +upstreamnt  +downstreamnt
atggccaacgtcaccgaccctctcgcccactccgtccacggaaccaacccccaaaacctc
gtcgaatacatcacccgtcaaaaaatctacgactctctctactggaaagaagaatgcttc
ggcctctccgcctccgacgtggccaccaaagcaaccgatttaaaagcattgggtggtagt
tacggagggaataataaacctaccaggttcttgtgcctggcgttgaaattgttgcagatt
cagccggaggaggggattgtggaggaatttttggagaatgaggaattcaagtatgttaga
gctttaggggcgttttatttgaggttgacgggaaggcctgcggagatttacgaattgatt
gaaccgttgtttaatgactttagaaagttgaggttcagagagtcgaccgggtggaaggtt
acgtatatggatgaattggcggatgagttgttgacttccgataggtattgtgggattgca
ctgccccatttgccaaagagg

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (43)   

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