KEGG   Truepera radiovictrix: Trad_1623
Entry
Trad_1623         CDS       T01254                                 
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
tra  Truepera radiovictrix
Pathway
tra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Trad_1623
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tra03019]
    Trad_1623
Messenger RNA biogenesis [BR:tra03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Trad_1623
SSDB
Motif
Pfam: Lactamase_B Lactamase_B_2 RNase_J_C RMMBL
Other DBs
NCBI-ProteinID: ADI14742
UniProt: D7CYA3
Position
1744988..1746712
AA seq 574 aa
MNRTRKHPAGAKGSAGRSTDKEAAQSAPKALRIIPLGGMGEIGKNMFAVEYEDEILLIDG
GLAFPDADMLGVDILVPKIDYVVENAARVKGWVLTHGHEDHIGGIPYMLKLLPKIPMYGA
KLTLGLLRGKFEEFKLKESDADLREISTDERIKISKYFTVDFFRMTHSIPDNSGLIIHTP
LGRVVHSGDFKLDYNPADGKTSHLHKLAQAGQEGVLALISDSTNAERPGYTPSERDVMNG
FEQLVKDAKGRVIVTTFASHIHRLQNFIRVAERYDRRVIVEGRSMVKNTRIAQELGYLET
KHPLASPDDLAELADDKILFLCTGSQGQPMAALSRLAAGTHKKISLKPGDTVILSSNPIP
GNEEAVGRVINQLYARGVNVFYPPTYRVHASGHASQEELKLILDLTRPKFFIPWHGEVRH
QLNHQKLAAGMATPPLKSVIAENGDILELTRNDLKKVGQVDAGVLYIDAVGKSSEEITEP
IIRDRQTLSSEGVVVIMALAGRNPSVEVITRGVSQNHRELNSEIEKIALENLKRGVREKR
TLSDIRDDIFYPVRRYLRKTTGRNPLIVPTVIEG
NT seq 1725 nt   +upstreamnt  +downstreamnt
atgaaccgaacccgtaaacaccccgccggcgcgaagggaagcgccgggcggagcaccgac
aaagaagccgcgcagagcgcccccaaagcgctccgcatcatccccttggggggcatgggc
gagatcggcaaaaacatgttcgccgtcgagtacgaagatgagatcctgctcatcgacggc
ggcctcgcgtttcccgacgccgacatgctgggcgtcgacatcctggtacccaagatcgac
tacgtggtcgaaaacgccgcgcgcgtcaagggctgggtgctgacccacggtcacgaggac
cacatcggcggcatcccctacatgctcaaactgctccccaagatccccatgtacggcgcc
aagctgaccctggggctactgcgcggcaagttcgaggagttcaagctcaaagagagcgac
gccgatctgcgcgagatctcgaccgatgagcgcatcaagatctccaagtactttaccgtc
gactttttccggatgacgcactccatccccgacaactcggggctgattatccacaccccc
ttgggccgcgtcgtgcactcgggcgacttcaagctcgactacaaccccgccgacggcaag
acgagccacctgcacaagctcgcccaagccgggcaagagggggtcttggcgctcatctcg
gattcgaccaacgccgaacgccccggttacaccccgagcgagcgcgacgtgatgaacggc
tttgagcagctcgtcaaagacgccaagggccgggtgatcgtcaccaccttcgcctcgcac
atccacaggttgcagaactttatccgcgtcgccgaacgctacgaccgccgggtgatcgtc
gaggggcgctcgatggtcaaaaacacccgcatcgcgcaggagctcggctacctagagacc
aaacaccccctagccagccccgacgacctcgccgaactcgccgacgacaagatcctgttt
ctctgcaccggctctcaggggcagccgatggccgccctttcgcggctcgccgcgggcacc
cacaagaagatcagcctcaaaccgggcgacaccgtgatcctgtcatcgaaccccatcccc
ggcaacgaggaggcggtcgggcgggtcatcaaccagctctacgcgcgcggggtcaacgtc
ttctacccccccacctaccgcgtgcacgcttcggggcacgcctcgcaagaggagctcaag
ctcatcttggacctcacgagacccaagttctttatcccgtggcacggcgaggtgcggcac
cagctcaaccaccaaaagctcgccgcggggatggcgacgccgcccctaaagagcgtcatc
gcggaaaacggcgacatcttggagctcacccgcaacgacctcaaaaaggtcgggcaggtc
gacgccggcgtgctctacatcgacgcggtcggcaagagcagcgaggagatcaccgaaccg
atcatccgcgaccggcagacgctctcctcggagggcgtggtggtcatcatggcgctcgcc
gggcgcaacccctcggtcgaggtcatcacccgcggggtgtcgcaaaaccaccgcgagctc
aacagcgagatcgaaaagatcgcgctcgagaaccttaagcgcggcgtccgcgaaaagcgc
accctgtccgacatccgcgacgacatcttctaccccgtgcgccgctatttgcgcaagacc
acgggccgaaacccgctcatcgtaccgacggtgatcgagggctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (30)   

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