KEGG   Trichoderma reesei QM6a: TRIREDRAFT_124317
Entry
TRIREDRAFT_124317 CDS       T02991                                 
Name
(RefSeq) exoribonuclease
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tre  Trichoderma reesei QM6a
Pathway
tre03008  Ribosome biogenesis in eukaryotes
tre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tre00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    TRIREDRAFT_124317
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TRIREDRAFT_124317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tre03021]
    TRIREDRAFT_124317
   03019 Messenger RNA biogenesis [BR:tre03019]
    TRIREDRAFT_124317
   03009 Ribosome biogenesis [BR:tre03009]
    TRIREDRAFT_124317
   03016 Transfer RNA biogenesis [BR:tre03016]
    TRIREDRAFT_124317
Transcription machinery [BR:tre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     TRIREDRAFT_124317
Messenger RNA biogenesis [BR:tre03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     TRIREDRAFT_124317
Ribosome biogenesis [BR:tre03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    TRIREDRAFT_124317
Transfer RNA biogenesis [BR:tre03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    TRIREDRAFT_124317
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC_3
Other DBs
NCBI-GeneID: 18483866
NCBI-ProteinID: XP_006963130
JGI: Trire2_124317
UniProt: G0RD43
Position
Unknown
AA seq 1029 aa
MGIPAAFRWLSNKYPKIISPVIEETPITTDDGVTIPVDTTRPNPNGEELDNLYLDMNGIV
HPCSHPEDRPAPADEEEMMLEVFRYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRSRRF
RSAREAKEKEEDKQALIELLKRQNGGVFEAADSEAVVKKAFDSNSITPGTPFMDILAVSL
RYWCQYKLNTDPAWAKLKIIISDATVPGEGEHKIMSFIRSQRASPNYDPNTRHVIYGLDA
DLIMLGLATHEPHFRVLREDVFFNEGKNRACKLCGQKGHEANNCRGTAKPNDMAEGDEQA
KAVQAPLKPFIWLHVSVLREYLAIELSVPDLPFRFDLERAIDDWIFMCCFVGNDFLPHLP
ALEIREHGIDTLTTIWRNSLPSMGGYVTKDGHIDLERAQVILDGLASQESAIFKRRKEQE
DRREASFKRRKLQNEAYSRNGQNGASSKINGHADPSKGLHLFPIAAQTANSTNNLTVTHD
MVVSRGAVQDATLANRGAASVIRDRLRAGTAKVEDASSAPADASTDTVADAPADAAVDAP
ADVPADSAQQTLPSSLGKRKAPDSDEVANSSSAESSSNKPVAPQEAEPVDNVRLWEDGYE
DRYYQQKFGKDPQDIEFRHKVAHAYVEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFKD
LAKMEISFEKGRVSRPFEQLMSVLPAASRHALPEVFHELMTEKDSEIIDFYPEEFEIDLN
GKKMAWQGVALLPFIDMKRLLKAVQSKYPLLSPDDIARNTIGKDVLILSDNHEGLYDDIL
TTFYSKKQDRSRLTINPANSNGLAGEIEKQEDSVPHGALRYPLERRSMPDLDYDHSISVY
YDMPQVSQTHKSMLLRGVRMPPPALTRSDIEEIRGKANRGGRNYGRPYGNNNGRQRGGYS
GGYRDNREPYNGRDRDNQRFQQYPPNQPYGMPQQPPFGMPPQPPFGMPPQPPFGMPQQPP
FGVPQHGGWQPSTGPAFDGRGGPPSYPNARYQQGRSDGRNEYRGRGRGGYNSGPRPPYRG
GNWQGRDHA
NT seq 3090 nt   +upstreamnt  +downstreamnt
atgggtatccccgcggccttccgatggctatccaacaagtaccccaaaatcatctccccc
gtgatagaggagacgcccatcaccaccgacgatggcgttaccatcccggttgacaccacc
agacccaaccccaatggcgaggagctcgacaacctgtacctggacatgaatggcattgtc
cacccatgttcgcatcccgaggacaggcctgcgcccgccgacgaggaggagatgatgctc
gaggtctttcgatataccgaccgtgtcgtcaacatggtgcgcccgcgcaagatcctcatg
attgccgttgacggagtcgcgccaagagcgaagatgaaccagcagcggtcgcgacgattt
cgatcagctcgggaagccaaggagaaggaagaggacaagcaagcgctcatcgagttgctc
aagcgccagaatggcggcgtcttcgaagctgcagactccgaggccgttgtcaagaaggcg
ttcgattccaactccatcaccccgggcacgccattcatggatatcctcgccgtgagtttg
cggtactggtgccagtacaagcttaacacggatcccgcctgggctaagctgaagatcatc
atctctgatgctaccgtgccgggcgaaggtgaacataaaatcatgtccttcatccgatcc
cagcgcgcctccccaaactacgatcccaacacccgccatgtcatctatggcttggatgcc
gatctcatcatgctgggactcgccacgcacgaacctcacttccgagttctgcgcgaagat
gtcttcttcaacgaaggcaagaacagggcttgcaagctctgtggccaaaaagggcacgag
gcaaacaactgtcgtggaaccgcaaagcccaacgatatggccgagggcgatgagcaagcc
aaggccgtgcaggcccccctgaagcccttcatctggctgcacgtctctgtcttgagggag
tatctcgccatcgagctgtctgttcccgaccttcccttcaggtttgatctggagcgggcc
attgacgattggatcttcatgtgctgcttcgtcggtaatgatttcttgcctcacttgcca
gctttggaaattcgcgaacacggaatcgacaccttgaccacgatttggagaaacagcttg
ccgtccatgggcggctatgtcactaaagatggtcacattgatttggagagagcccaagtc
atacttgacggccttgccagccaagagagtgcaatcttcaagcgaagaaaagaacaggag
gatcgccgggaagcttctttcaagcgcaggaagcttcaaaacgaggcctactcgaggaac
gggcaaaatggcgcgtcctccaagatcaacggacatgcagacccgtccaagggcctgcat
ctcttccccattgcagcgcagactgcgaactcgacaaacaatctcaccgtcacgcacgac
atggtagtcagccgcggcgcggtccaagatgcgacgcttgccaataggggggctgccagc
gttatccgagatcgacttcgcgccgggacggccaaagtcgaagacgcatccagcgcccca
gcggacgcctcaacggacacagtggcagatgctccagcagatgctgcagtcgacgcccca
gcagacgtcccagcagatagcgctcagcagactctcccttcgtctcttggaaagagaaag
gccccggattccgatgaggtcgccaactcttcttcggccgaatcatcgagcaacaagccc
gtggcaccacaagaggctgagccggttgacaatgttcgtctctgggaagatggctacgaa
gatcgctattaccagcagaagtttggcaaagatccgcaagacattgaatttcgccacaaa
gtagctcacgcatacgtggaagggttggcgtgggtgttgttgtattacttccaagggtgc
ccatcctgggagtggtattatccttaccactatgccccctttgccgctgacttcaaagat
ctcgcaaagatggaaatcagcttcgagaagggacgagtttccaggccgtttgaacaactg
atgagcgtcctgccagcggcttctcgccacgctctccccgaggtattccacgaactcatg
acagagaaagacagcgagatcatcgacttctatcctgaggaatttgagattgacctcaat
ggaaagaagatggcatggcagggtgtggctttgcttccattcatcgacatgaagcgcctc
ctcaaggctgtacaaagcaagtatccgcttctaagcccagacgacattgcacgaaacacg
attggcaaggatgtcttgatactgtccgacaatcacgagggcctctacgacgacatcttg
accacattctattccaagaagcaggaccgctcaaggctcaccattaacccagcaaacagc
aatggcttggcaggagaaatcgaaaagcaggaggactcggttcctcacggagccttgcgc
tatccgctggagcgaagatctatgcccgatctcgattacgaccattccatcagcgtttac
tatgacatgccccaggtatcgcaaacccacaagtcaatgctattgcgcggagtgcgaatg
ccgcctcctgccctgaccaggagtgacattgaggagatccgaggcaaagccaatcgcgga
ggtcgcaactacggacgaccgtacggcaataacaatggccgacaacgcggtggttattct
ggcggctatagagacaaccgggagccttacaacgggcgcgacagggacaaccagcgcttc
cagcaatacccccccaatcaaccatatggcatgccgcaacagccgccttttggcatgccg
ccacaaccgccttttggcatgccaccacaaccgccttttggcatgccgcaacaaccgcct
tttggcgtaccgcagcacggtgggtggcagccgtcaacggggccggcgtttgatgggaga
ggaggcccaccgtcataccccaatgcgcgataccaacagggccggtctgacggtaggaat
gagtatcgcggtcgggggaggggcggatataactccggacctcggcctccctatcgcggc
ggcaactggcaaggacgtgaccatgcgtaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (55)   

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