KEGG   Trichoderma reesei QM6a: TRIREDRAFT_43225
Entry
TRIREDRAFT_43225  CDS       T02991                                 
Name
(RefSeq) hypothetical protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
tre  Trichoderma reesei QM6a
Pathway
tre03018  RNA degradation
tre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TRIREDRAFT_43225
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TRIREDRAFT_43225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tre03019]
    TRIREDRAFT_43225
   03041 Spliceosome [BR:tre03041]
    TRIREDRAFT_43225
Messenger RNA biogenesis [BR:tre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TRIREDRAFT_43225
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TRIREDRAFT_43225
Spliceosome [BR:tre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TRIREDRAFT_43225
 Complex C
  U2 snRNP components
    TRIREDRAFT_43225
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 18484913
NCBI-ProteinID: XP_006963572
JGI: Trire2_43225
UniProt: G0RF89
Position
Unknown
AA seq 75 aa
VAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDDDEEDSDE
VKTISRKSEMLFVRG
NT seq 225 nt   +upstreamnt  +downstreamnt
gtggccgagccgctcgacctcgtgcggctactgctgaacgaggtcgtcttcgtcaagctg
cgcggtgaccgagagctcaagggcaagctccacgcctacgatagccactgcaacctggta
ctgggcgaggtggaggagaccatttacgccgtggatgacgatgaggaggacagtgacgag
gtcaagacaattagcaggaaatcagaaatgctgtttgtgagaggt

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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