KEGG T03454: JO41

Treponema sp. OMZ 838: JO41_01235

Entry

JO41_01235        CDS       T03454

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

trm Treponema sp. OMZ 838

Brite

KEGG Orthology (KO) [BR:trm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trm03032]
    JO41_01235 (gyrB)
   03400 DNA repair and recombination proteins [BR:trm03400]
    JO41_01235 (gyrB)
Enzymes [BR:trm01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     JO41_01235 (gyrB)
DNA replication proteins [BR:trm03032]
Prokaryotic type
  DNA Topoisomerases
   JO41_01235 (gyrB)
DNA repair and recombination proteins [BR:trm03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      JO41_01235 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3

Other DBs

NCBI-ProteinID:

AIW88585

Position

270341..272257

AA seq 638 aa
MTTPSYSAENITVLKGLDAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGYCDTIL
VVLEKNDTVRVEDNGRGIPVDIHPEEGVSALELVLTRLHAGGKFDKGSYKVSGGLHGVGV
SVVNALSTSMEAIVCRDGFEYVQKFAAGEPLGPVAKRGETQKRGTTIRWTADPTIFTETT
TYNFDVLAVRLRELAFLNNTISIVLRDERLSTPKEVTFAFDGGLSHFVRYLNENKQVLPK
EPIYFDGEKNDVIVELAMQYNDGYKENILSFVNDINTREGGTHLEGFKTALTRVMNEFLK
KNAKLSKKMEKEEKLMGEDVRAGLTAVLSVKVPEPQFEGQTKTKLGNSDVRSIVDTFINE
KLTLFFEQNPTEIDKILEKAVGEATARIAARKAKEATRRKSGLDSFGLPGKLADCSSKDP
EKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLSNEKLQPIIATLG
TGIGEDFNLDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPELIEHGYVYLAMPPLYK
ISYNKKEWYVYDDSERDSILNEIGRNVSPAVQRYKGLGEMDGTQLWETTMDPARRKMMRV
TLPDAVEADRIFSTLMGEEVEPRRKFIEENAVYANLDV

NT seq 1917 nt +upstreamnt +downstreamnt
atgacaacgccttcatattcagcggaaaatattacggttttaaaggggctggacgccgtc
cgcaagcgccccggaatgtatatcggctctaccggtcccgatgggctgcatcatttggta
tacgaagttgtcgacaactgtatcgacgaagcgatggcaggttattgcgataccattttg
gtcgtattggaaaaaaacgataccgtcagggtagaagataacggacgcggtattcccgtc
gatattcaccccgaagagggcgtgagcgcgctggagttggttttgacacgactccatgca
ggcggtaaattcgacaagggttcgtacaaggtttccggcggtttgcacggtgtcggtgtg
tctgtcgtcaatgcgctttccaccagtatggaagcgattgtttgcagggacggctttgaa
tatgtgcagaaatttgccgccggtgaaccgctcggcccggttgccaaacgaggagaaacg
caaaagcgcggcactaccatccgctggactgccgacccgactatttttaccgaaacgacc
acctataactttgacgtactggcagtccggctgcgcgaactcgcctttttgaacaacacc
atcagcatcgtattgcgggatgagcggctttctacacccaaagaagttacttttgccttt
gacggcgggctttctcactttgtgcgttacctgaacgagaacaaacaggtgctgccaaaa
gaaccgatctattttgacggtgaaaaaaacgatgtcattgttgaacttgcaatgcagtac
aacgacggttataaagaaaacatcctttcctttgtcaacgatattaacacacgggaaggc
ggtacccacctcgaaggttttaaaacggcgctcactcgcgtgatgaatgaattcttgaaa
aaaaacgccaagctttctaaaaagatggaaaaagaagaaaagctgatgggtgaagatgtg
cgtgccggtttaacggcggtactgtcggtcaaagttcccgagcctcagtttgaaggacag
acgaagaccaaactcggcaacagcgatgtgcgcagcatcgttgacacctttatcaacgaa
aaactcaccctcttttttgagcaaaacccgaccgaaatcgataaaatcctcgaaaaagca
gtaggagaagcaaccgcccgtatcgcagcgcgcaaggcaaaagaagcgacccgccggaaa
agcgggctggacagcttcggactgccgggaaaacttgccgactgttcttccaaagacccg
gaaaaatgtgaggtttacattgtagaaggtgattcagctggcggttccgcaaagaaggga
cgcgacagcaagacgcaggcaattttaccgctctggggaaagatgctgaacgtcgagaag
acccggctcgacaaggtactcagtaatgagaaactccagccgattatcgcaacacttggt
accggcatcggtgaagactttaaccttgataaaatccgctaccacaagattatcattatg
gctgatgccgatgtggacggttcccatatccgcacgctcttactcaccttctttttccgc
tatatgccggaactgattgaacatggctatgtgtatctcgcaatgccgccgttgtataaa
atttcctataataaaaaagaatggtacgtgtatgacgacagcgaacgggacagcattttg
aatgaaatcggacgcaacgtcagccccgcggtacagcggtacaagggtttgggtgaaatg
gacggcacgcagctctgggagaccacgatggatcctgcccgccgtaagatgatgcgggta
accctgcccgatgcggtagaagctgaccggattttcagcacgctgatgggcgaagaagta
gagccgcgccgcaaatttatcgaagaaaatgcggtgtatgcaaatctcgatgtataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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