KEGG   Treponema sp. OMZ 838: JO41_04355
Entry
JO41_04355        CDS       T03454                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
trm  Treponema sp. OMZ 838
Pathway
trm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:trm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JO41_04355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:trm03021]
    JO41_04355
   03400 DNA repair and recombination proteins [BR:trm03400]
    JO41_04355
Enzymes [BR:trm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JO41_04355
Transcription machinery [BR:trm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JO41_04355
DNA repair and recombination proteins [BR:trm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JO41_04355
SSDB
Motif
Pfam: RNA_pol_A_CTD RNA_pol_L RNA_pol_A_bac HHH_5
Other DBs
NCBI-ProteinID: AIW89132
Position
complement(943296..944351)
AA seq 351 aa
MARKNLLKGFKKPKGLEFAADVSNDSYGKFTASPFETGFGTTIGNCLRRVLLSSIQGYAI
SAVKITSYGADDVPHGISSEFEAIPNVTEDTMEVLNNLKQMRLRLPNEIEQDVFLFDFKG
PCSVSAADFAKPGQLEILSDDLHIMELMGNAHVELEVQVDFGRGYVPAETNEKYVEVVGT
ISLDTIFSPVRKVSYEIQPCRVGQRNDYDKLVLEIWTDGTIRPEDALAEAAKIAKEHFTV
FVNFNENELLSDDESDESDEMIKQLLDTPITELDLSVRASNCLKNANVSTIRDLTMMTED
EISKTRNVGKKSLQEIQEKLAERNLSLGMTDYSHLKNSIKLSRQKEETDEA
NT seq 1056 nt   +upstreamnt  +downstreamnt
atggctcgtaaaaatcttttgaaaggattcaaaaaaccaaaaggtctggaatttgcagca
gatgtctcaaatgacagctatggtaagtttacggcgtctccctttgaaacaggattcggc
acaacgatcggcaattgtttgcggcgtgttttgttgtcttcgatacaagggtatgctatt
tccgctgtaaaaattacctcttacggcgctgatgatgttccgcatggtatatcgagcgag
tttgaagcaattccaaacgtaaccgaagacacgatggaagttttgaataacctcaagcaa
atgcggctgcggctcccaaatgagattgaacaagatgtctttttgtttgattttaaaggc
ccatgctccgttagtgcagccgattttgcaaaacccggtcaacttgaaattttatccgat
gatcttcatattatggagctgatgggaaatgctcatgttgagctggaagttcaggttgat
ttcggccgcggttatgtaccggcggaaacgaatgaaaaatatgtcgaagttgtcgggaca
atctcgttggatactatctttagcccggttcgaaaagtcagctatgaaattcagccgtgc
agagtagggcagcgcaacgattatgataagcttgtgcttgaaatctggacggacggtacc
atacggcctgaagatgcgctagcggaagctgcaaaaatcgcgaaagaacattttaccgtt
tttgtgaactttaacgagaatgaacttttgagcgatgatgaatccgatgaaagcgatgaa
atgataaagcagttgcttgacacaccgataactgagcttgatctttccgtgcgggcttct
aattgtttgaaaaacgcaaacgtttcaacaatccgtgatttgacaatgatgaccgaggat
gagatttcgaaaactcgaaatgtcggaaagaagagtttgcaggaaatacaagaaaagttg
gcggaacgtaatttgagtttgggtatgactgattacagtcatttaaagaattcgatcaag
ttatcgagacagaaggaagaaacagatgaagcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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