KEGG   Takifugu rubripes (torafugu): 101077343
Entry
101077343         CDS       T02386                                 
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
tru  Takifugu rubripes (torafugu)
Pathway
tru03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101077343 (dhx38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tru03041]
    101077343 (dhx38)
Enzymes [BR:tru01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101077343 (dhx38)
Spliceosome [BR:tru03041]
 Complex C
  Other components
   Step II factors
    101077343 (dhx38)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 T2SSE AAA_16 Flavi_DEAD AAA_30 PhoH AAA_7
Other DBs
NCBI-GeneID: 101077343
NCBI-ProteinID: XP_003970024
Ensembl: ENSTRUG00000017588
Position
13:19124468..19139520
AA seq 1244 aa
MMDDDVSMHRLEGEDPTAQIGGLIVKKKSAAAEPHVFRAPTPRTSLLGLDLLAAQKRRER
EEQADNERNSKKSKVSSYKEWEEAKSDSGSDEEEDEKDKHAKKERKYRVTGSETPSNPGG
VSEEFRRRHQQREKDRREHGVYASSKEERNREKDREKNRDRERDRRSERDDRGNSQSRSE
RGERSERSMRDGWSGRLSRGIRRDEPLTPQHHPKGSFTPSRSNWEEDDSGFGSSRHSQWE
SPSPAPSGKETDRSERSQRSGQESERRDRSVRGRYPNDTPLPTPSYKYNEWANDRKHLGS
TPRLSQGKARKGDGEGGILFDNEDEKEQWEEDQKQADRDWYMMDEGYDEFHNPFTMTSEE
YIKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDEDFEEDNAAKVH
LLVHNLVPPFLDGRIVFTKQPEPIIPVKDPTSDMAIISRKGSQLVRKHREQKERKKAQHK
HWELAGTKLGDIMGIKKKEEEDVCGGKPVGEDGKVDYRAEQKFAEHMKEKNEARSEFAKK
KSLLEQRQYLPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQLTQYLHEDGYTSYGMVGC
TQPRRVAAMSVAKRVSEEIGSNLGDEVGYAIRFEDCTSEKTLIKYMTDGILLRESLRESD
LDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKFAAFFGNVPIF
HIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGLMGDILIFMPGQEDIEVTSDQIVE
RLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVVD
SGYCKLKVFNPRIGMDALQVFPISQANANQRSGRAGRTGPGQCYRLYTQSAYKNEMLTTT
IPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPT
GRLMVEFPLDPALSKMLIVSCDMCCSADILIIVSMLSVPAIFYRPKGREEESDQVREKFS
VPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIMVQQKMNLVSC
GSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIIYHEL
VMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAREEISSMETEMSMAEQQ
LRARREEQEKKSNLGSVRAVKICTPGRKEEAPMTPKRTPARFGL
NT seq 3735 nt   +upstreamnt  +downstreamnt
atgatggacgatgacgtgtccatgcatagactcgagggagaggacccaactgctcaaatt
ggtggactgatagtaaagaagaagagtgctgctgcagagccgcacgtgtttcgtgcaccc
accccacgtacctccttactgggtttggatttgctggctgcccaaaaaaggagggagcgt
gaggaacaggctgataatgagaggaatagcaagaaatcaaaggtttcttcctacaaggaa
tgggaggaagctaaaagtgattctgggtctgatgaagaagaggatgaaaaggacaaacat
gctaagaaagagaggaagtatcgtgtgacgggctccgaaacgccctcaaaccccggaggg
gtcagtgaagagttccgtcgcagacaccagcagagggagaaggaccgacgtgagcacggc
gtctacgcctcctccaaggaggagcggaaccgggaaaaagacagagaaaagaacagagac
agggaacgagaccgaaggagtgaaagagatgacagagggaacagccagagccgttcagaa
cgtggggagagaagcgagcgctctatgagggatggctggtccggacgcctcagccggggg
atcaggagagatgaacccttgacacctcagcatcaccctaaaggttctttcacgccttcc
cgctccaactgggaagaggatgacagcggtttcggcagttcacggcattcccagtgggag
tctccctctcctgctccgtctggcaaagagacagatcgctctgagcgtagccagcgttcc
ggccaagagagcgagaggagggacaggtcagtcagaggccgttaccccaacgacacccct
ctacctaccccatcatacaagtacaacgagtgggccaacgacagaaagcatttaggatct
acacctcgcttatcacaaggaaaagcgaggaaaggtgatggcgagggcggaatcctgttt
gataatgaagacgagaaggagcagtgggaggaggaccagaaacaagccgacagagattgg
tacatgatggatgaaggctacgatgagttccacaaccccttcactatgacctctgaggaa
tacattaagaagagggagcagatccttcagaagcagactcagaaaagaatctcagcccag
aaacgacagataaatgaggataatgagcggtgggagaccaaccgcatgctgaccagcggt
gtggtgcagaggttggaggtggatgaagactttgaggaagataatgctgctaaagttcac
ctgttggttcacaacctggtccctcccttcctggatggacggatagtcttcaccaagcag
ccagaaccgatcatccctgtgaaagatccgacctctgacatggcaattatttcccggaaa
ggcagccagcttgtccgcaaacaccgtgagcagaaagaacgcaaaaaggctcagcataaa
cactgggaactggctggcacaaagctgggggacatcatgggcataaagaagaaagaggaa
gaagatgtctgtggaggcaagcctgttggagaggatggcaaagtagactacagagctgag
cagaaatttgcagaacacatgaaagaaaagaatgaggcccgcagtgagtttgccaagaag
aaaagtcttctggaacagagacagtacttacctatatttgctgtgagacaacaacttctt
aacatcatcagggacaacaacatagtgatcgttgttggagagacgggcagtgggaagacc
acccagctgacacagtacctgcacgaggatggctacacaagctatggcatggtaggttgt
acccagccccgaagagtggcagccatgagcgtggccaagagagtcagcgaagagatcggc
tccaacctcggagatgaggttggttatgctatccgttttgaggactgcacgtctgagaaa
actttaataaagtacatgacagacgggatcctgctgagggaatcactgagggagtccgat
ctggaccactacagcgctgttatcatggacgaggctcacgaacgctccctcaacacggat
gttctctttggcctgctgcgtgaggtggtatcccgacgtacagatttgaaactcatcgtt
acctcggcaaccatggactcggacaagttcgctgcattttttggcaatgtacctatattt
cacatcccaggaaggacgtttcctgtagacatcttgtttagcaagactcctcaggaggac
tatgtggaggcagcagtgaagcaggccctgcagatccacctcagtggcttgatgggagac
atcctcatcttcatgcctggtcaggaggacattgaggtgacgtccgatcagatcgtggag
cggttggaagagctggaaaatgctccggcattagccgtgctgcctatttactcccagctg
ccctctgacctccaggccaagattttccagaaggctccagatggtgtgagaaaatgcatc
gttgctaccaacatcgctgagacctctctcactgtggatggaatcatgtttgttgtggat
tcaggatactgcaaactcaaggttttcaatccccgaattggaatggatgctctgcaggtt
tttcccatcagccaggctaatgccaaccagcgttctggtagagcgggacgtacaggaccg
ggccagtgttacaggctctacactcagagcgcctacaaaaatgagatgctgacgaccacc
ataccggaaatccagaggaccaacctggccaacgtggtcctgctgttgaagtctctgggc
gttcaggatttgctcctcttccacttcatggacccaccccctgaagacaacatgctcaac
tccatgtaccaactctggattttaggagctctggacaacaccggcgctttgaccccaacc
ggacgtctgatggtggagtttcccctcgaccccgccctctccaagatgctgatcgtgtcc
tgcgacatgtgctgcagcgctgatatactcatcatcgtctccatgttgtcggtcccggcc
atcttctacagaccgaagggccgtgaggaggaaagtgaccaggtgagggagaagttctcc
gtcccggagagcgaccacctcacctaccttaacgtctacatgcagtggaagaacaacaac
tactccagcatctggtgcaacgaccacttcatccacaccaaggccatgcgcaaggtgcgt
gaggtgcgctcccagttaaaggacattatggtgcagcagaagatgaacctggtttcctgt
gggtcagactgggacatcatcagaaaatgcatctgcgccgcttactttcaccaggctgcc
aagctcaagggcatcggtgaatatgtcaacgtgaggacaggcatgccgtgtcacctgcac
cccaccagctccctctttggcatgggctacacgcccgactacatcatctaccacgagctc
gtcatgacgaccaaggagtacatgcagtgtgtgaccgcagtggacggggagtggctggca
gagctgggccccatgttctacagtgtcaagcaagccgggaaaagcagacaggagaaccgg
cgtcgtgccagagaggagatcagcagcatggagacggagatgtccatggcagagcagcag
ctgcgagcccgtcgagaagaacaggagaagaagagcaacctgggcagcgtcagagcagtg
aaaatctgcaccccaggacggaaagaggaggcccccatgacgcccaaacgcacgccggcc
cgatttggactgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (14)   
   Pfam (14)   
All databases (56)   

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