KEGG   Trichinella spiralis: Tsp_01416
Entry
Tsp_01416         CDS       T01609                                 
Name
(RefSeq) cytoplasmic FMR1-interacting protein
  KO
K05749  cytoplasmic FMR1 interacting protein
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_01416
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     Tsp_01416
   Factors involved in mRNA localization
    Other mRNA localization factors
     Tsp_01416
SSDB
Motif
Pfam: FragX_IP CYRIA-B_Rac1-bd
Other DBs
NCBI-GeneID: 10911320
NCBI-ProteinID: XP_003377234
Position
Unknown
AA seq 1257 aa
MTNPKKVLRVNNTAKSECTEYTVFTIESDDTVQTHDMSGEVVSFADAIGNVELLDEIPLP
DCQPVVEALPQTLRYRANFDANFEDRSAFITGISKYIEEATRHAELNEILLEGERHAINL
YTWRCCSRAVPMAKSNEQPNRAEIYDKIVEVLQPEDRATKRFCEEVKRLSHSEKRKDFVS
EAYLLSLGKLINMFAVLDELKNMKASIKNDYSTYRRAAQFLQVMSDSQTLQESQNLSMFL
ATQNKIKDSLRSQLQAIEGYDELLADVINICMHFYENHLYVTPAEKHMLIKQLEVVPLFG
DMQVMPFAFIKRCASYEASRWPLASVESTHCPINIVELLRTFREEHDEFVTRLARIHNKI
AVYDKNVVRSVDENRHLTELALQGLQLLSSWTSTVLELYSWKLLHPTDPHQSADCPPTAE
EYERATRYNYSSDEKFAIIEIISMVKGLQSLMGKMEAEFQLAIRKSVYYDTQEFVQITLR
EPLRKATKNKKELIRTILQSVRDTVIDSSNAPELYEDIYGTRSRRDTGSNSVEFHIEPRA
VPPSSTQLYMMRTMLESLVSDRSSGRKTIRKDIDGQHLSIISEFLRNSHYWNALLNFNEM
LSMCCDMSQLWFREFYLEMTMGQRIQFPIEMSMPWILTDHILQTKNPSYIECILYQLDLY
NDSAECAMTRFEKQFLYDEVEAEVNLCFDQFVYRLSVQIFSHYKQLAASMLLDKRFKSDC
SMHGVNVPFVFSTRYETLMKQRHFQLLGRSIDLNRLLTQRINAFFLKSLDLAINRFEATA
LTGIVELDGLIHVNRLCHKLLKNHLQGLTDFDDLYQEANHSISAPYGRITLHVFWELNYD
FLTNYCYNGSTNRFVRSRASSNSASAAQRDKPPQASAYFFWGSKAFNTAFSNIYTMYCGF
VGVPHFHAMAKLLKYNGIAVILEELLKVSENLLQNSLLQPLKSVAKLIPKVCRLPLYDYG
SPGVLAFYYAQLKNLIHNNDLKMEIFQACREMGNLMLFCLWLEKSLSQEEVSDLLHAAPF
QNIIPRPYCKVHILLEIENEKPEMKIKRLEQKYANLHVSNIMERYGSEKQASIAQDCDLL
TKERLCCGLSIFEVILMRIKSFLTDPIWSGSMLPANSVMTIDECSEFHRLWSALQFLYCM
PPRENEITVEELFGEGLNWCGCALIVLLDQRRRFEIVDFCYHILRVQRVDGCDDIVPGVG
QLTRMVERIRVFQILNGCIFGVICKYLRFGDFNDTVPAERIKYFQPPLKQAVISSLQ
NT seq 3774 nt   +upstreamnt  +downstreamnt
atgacaaaccccaaaaaggtgctacgtgtgaacaatacggcaaaaagtgaatgcactgaa
tatactgtatttacaattgaaagtgatgatacagttcaaacgcatgacatgtctggagag
gtagtatcatttgcggatgcgataggcaatgttgaattgctggatgaaattcctcttccg
gattgtcaaccagttgttgaagcattgccacaaactttgcgttacagagcaaattttgat
gctaactttgaagatcgatctgcgttcataaccggtatatctaaatatattgaagaagcg
acaagacacgctgaacttaatgaaattctattagaaggggaacgtcatgctattaatcta
tacacttggcgttgttgttcacgagctgtaccgatggcaaaatcaaatgaacaaccaaat
cgtgctgaaatttatgacaaaattgtggaagttcttcaacctgaagatcgcgctacgaaa
cgtttctgtgaagaggtgaaaagattgagccattcagaaaaacgaaaagattttgttagt
gaagcctatttgctttctctgggaaaattgatcaacatgtttgctgtattggacgaactt
aaaaatatgaaagcgtctataaaaaatgattattctacatataggagagctgcacaattt
ctacaggttatgtctgacagtcaaactttacaagagtctcagaatttgtcaatgtttttg
gctactcagaataaaatcaaagacagtcttaggagtcaacttcaagcaattgaaggttat
gacgaactgctggctgacgtgatcaacatttgcatgcatttttatgaaaatcatttatat
gtgacaccagcggagaagcacatgcttatcaaacaactcgaagttgttccactgtttggg
gatatgcaagtgatgccgtttgctttcatcaaacgatgcgcatcttatgaagcatccaga
tggccattggccagtgtggaatcgacccactgtccaataaacattgttgaattgttgcgc
acttttcgcgaagagcacgacgaattcgtcactcgattggctcgaattcacaacaaaatt
gcagtttatgacaagaatgttgttagaagtgttgatgaaaatcgtcatttgactgaactg
gcactgcaaggcttgcaattattgtccagttggacgtcgactgttttagaattgtattct
tggaaattgcttcatccaactgatcctcatcaaagtgccgattgtccaccaactgctgaa
gaatatgaaagagcaactcgatacaattattcttccgacgaaaagtttgccattattgaa
ataatttccatggtaaagggactgcaatctctgatgggaaaaatggaagccgaatttcag
ttagctataaggaaatctgtctactatgatactcaggaatttgtgcaaattactctgcga
gaaccgctacgaaaggcgacgaaaaataaaaaagaactaatacgaactattttgcaatct
gtcagagatacagttattgattcgtcaaatgcaccggaattgtatgaagatatatacggc
acacgttcacggcgtgatacgggaagcaattctgtggaatttcacattgaaccacgtgcc
gttccaccatcttctacgcagctttacatgatgagaacaatgcttgaatcattggtatca
gataggagcagcggtcgcaaaacgattcgtaaagatattgatggtcaacacttgagtata
atttcggaatttttgcgcaattcacactactggaacgcgttgcttaattttaatgaaatg
ttaagcatgtgttgcgacatgtcgcagttgtggttccgagagttctacttagaaatgacc
atgggtcaacgtattcaatttccaatagagatgtccatgccgtggattttgactgatcat
attttgcagacgaaaaatccatcttatatcgaatgcattctttatcagttggatctttac
aacgacagtgcagaatgtgcgatgacgagatttgagaagcaatttttgtatgatgaagtt
gaagcagaagtgaatctctgtttcgatcagtttgtttatcgcttgtctgtgcaaatattt
tctcattacaagcagcttgctgctagcatgctattggacaagcgattcaaatctgactgc
agcatgcatggagtcaacgtgcctttcgtattcagcacacgttatgaaacgttaatgaag
caaaggcattttcaacttcttggtagatcgattgatttgaatcgactgttgacacaacga
ataaacgcattttttcttaaatcgctcgatttggctattaacagatttgaagccacggct
ttgactggcattgtggaattggacggtttgattcacgtgaaccgactgtgtcataaattg
ctgaaaaatcacttgcaaggtttgacagattttgatgatttatatcaagaagcaaatcac
agcatatcggctccgtatggtcgtattacgttgcacgttttctgggaattgaattacgat
tttctgacaaattattgctacaatggatccactaatcgatttgtacgaagcagggcttcg
tcaaattctgcttctgctgcccaacgtgacaaaccaccgcaagcttcagcttactttttt
tggggaagcaaggcatttaatacagcattcagcaacatatatacaatgtattgtggtttt
gttggcgtgccgcattttcacgcaatggctaagctgctcaaatacaatggcatagcagtt
attttagaagaattgctcaaagtgagcgaaaatttgcttcaaaattctcttcttcaaccg
ttgaagagtgtggctaagctgattcccaaagtgtgtcgcttgcctttgtacgattacggt
tctccaggcgtactagcattttattatgctcagttgaaaaatttaattcacaataatgac
ttaaaaatggaaatattccaagcctgtcgtgaaatgggtaatttgatgttgttctgtctg
tggctagaaaaatcacttagtcaagaggaagtgtccgatttgcttcatgcggctcctttt
caaaatattattcctagaccgtattgtaaagttcatattcttctggaaatagaaaatgag
aaaccggaaatgaagattaaacgattagaacaaaaatatgcaaatttgcatgtttcgaat
ataatggaacgttatggttcagaaaagcaagcatccattgctcaggactgcgatttgttg
accaaagagcgtctttgctgcggtttgtccatattcgaggtaatattgatgcgcataaag
agttttcttactgatccaatatggtctggctccatgttgccagccaattctgtaatgaca
atcgacgaatgtagtgaatttcatcgtctctggtcagctttgcagtttttgtactgcatg
ccaccacgtgaaaatgaaattactgtcgaggaattgtttggtgaagggttgaattggtgt
ggttgtgcattaattgttttgcttgatcagaggagacgattcgaaattgtcgacttttgc
tatcacatactccgtgtgcaaagagtggatggctgtgatgacattgttcctggcgttggt
cagctaacacgaatggttgaacgaataagagtgtttcagattttgaatggatgcattttt
ggggtcatttgtaaatatttacgatttggcgacttcaacgacactgtaccagccgaacgg
ataaaatactttcaaccgcctttgaaacaagcagtgatctcttccttgcaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (48)   

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