KEGG   Trichinella spiralis: Tsp_03193
Entry
Tsp_03193         CDS       T01609                                 
Name
(RefSeq) putative MIF4G domain protein
  KO
K14327  regulator of nonsense transcripts 2
Organism
tsp  Trichinella spiralis
Pathway
tsp03013  Nucleocytoplasmic transport
tsp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Tsp_03193
   03015 mRNA surveillance pathway
    Tsp_03193
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_03193
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     Tsp_03193
   mRNA cycle factors
    P-body specific factors
     Tsp_03193
SSDB
Motif
Pfam: MIF4G Upf2 PA28_beta FrhB_FdhB_C
Other DBs
NCBI-GeneID: 10908444
NCBI-ProteinID: XP_003379535
Position
Unknown
AA seq 1099 aa
MSTVEVKSLGSGVEPVTDDEILSSIQQSIDRLGRKREIRQANLTAVEIRPDEAFLRKLDS
SLKKNTAFVKRLKTFTESQSANIIRDFRTLNLSRYVTEMVSSLCEAKLKNSDIIPLIELC
SLAHQRYADFSGFLLDYFKRTFSSSDSKVATNMSKLRVDLRFLVELLLHGILTEKEAAPV
LLDAVTIITRLEKERKFTFLSTLVSFCRQCGEDLLGLLPRNFRTVAQQKKIDYHCSDLIS
EELREKLMMKVKAYYNALIVHVSGLNGELLKMRQKNMRQMESKGEVHPAAVRNFEELKST
LDKLIQSMNTLANWLDVDTPHLPDEATLEESGESIQKSVVSKSSEESQSESPFEDEESRL
FYTSLPQLKEMLPQILFQDAQKNQENFSSEKDMEAMRALEKEMSEQMKKQSRIIIIIHLN
CKRKPLQVDDELKMENQNDVDQSSVSYTDVDGMSEETNTAELEDECVKSENCKSVNNGEK
SEEDHEDSSNVSSSILQMKSFIAKLPLLINRDMIDQAAIEYATHLNTKSNRRRLIKTLFE
VHRSRLDLLPFYSRLIAILDPVFPDIRNEICHLLISQFRHHIRKKDQVQIESKVKVCRYI
GELVKFGIFPKSDALLCFKLLLMDFRHHNIEMACAILDSSGYYLFHSSDSHLKMKFLLEQ
MKRRAETLYLDFRYQGMIMNAYYTCYPESVQPIVESCDQVEVPIVFKYIWHLVSNRTVLK
EVEFVLKEMQKIDWSDANVRTVAIASTVFQLHRKRAVWYCRVLSHRRSSCKFVADNVLEI
FRSSLESDSMLNQQQRMSLCMYMGELYNYKLINTSAYFSSLYLLLTLNVESVEGADMPTP
VEGLFRIRLACAMLQLCGSYFSRGVGAQKMTCYLKYLQQYCLRQASRECWKNDESAVLKV
KALLKETIEGLRKHGFVIFSTLEEANEAISAMEADCRTRMEHLVKTRYSCNDSAMHEMYE
LEEQLPDSGELDVDVAQIVQEPEDPMTSEQKVKFLLLTKNKSNRSVVKTIQVPEGSDLAM
NWKHREAAALKEKERMKRLTLNMTQRMQYEDNADANQSPHTNADTFLESKKSFIGYQMKQ
TNTKEFPGNSREMNSNGWF
NT seq 3300 nt   +upstreamnt  +downstreamnt
atgagtacggtcgaagtgaaatcgttaggtagtggagttgaaccggtaacggatgacgaa
atactgtcgagtattcagcagagtattgatagactgggacggaaacgtgaaattcgacag
gcaaatttgactgccgtagaaatacgaccagatgaagcatttttgcgaaagttggattcg
agtttgaaaaagaacacagcattcgtaaagcgactgaaaactttcactgaaagtcaaagt
gccaacatcatcagagattttcgtacattaaatttgagccgatacgtaactgaaatggtg
tcgagtttgtgcgaagcgaaattgaaaaatagcgatatcatcccattaattgaactttgc
tctttggcccatcaacgctatgcagacttttctggatttctgttggattattttaaacgg
acattttcaagcagtgacagtaaggtggcgacaaatatgagcaaattgcgcgtcgatctt
cgttttttggttgaacttctcctgcacggtattttgactgaaaaagaagcagcccctgtt
ctgttggatgctgtgactataattactcgcttggaaaaggaacggaaatttacatttctt
tcaacgttagtttcattttgtcgtcagtgcggtgaagatcttttgggtctgttgcctcgt
aattttcgcacagtcgctcagcagaaaaaaatagactaccattgcagcgatttgattagt
gaagaacttcgggaaaagttaatgatgaaagtcaaagcttattacaacgctttgatagtt
cacgtttctggattgaatggagagttgttgaaaatgcgacagaagaacatgcgtcaaatg
gaaagcaaaggtgaagtgcatcctgccgctgttcgaaatttcgaagaattgaaatcgact
ttggacaaactgatacagtcgatgaacacgctggcaaattggttggatgttgacacgcca
catttgcctgatgaagcaactttggaagaaagtggagaaagtatccaaaagtcagtggta
tcgaaatcttcagaagagtctcagtcggaatcgccattcgaagacgaagaaagtcgcctt
ttctacacatcacttccgcaactgaaagagatgcttcctcagatattgtttcaagatgcg
caaaaaaatcaggaaaatttttcttcggaaaaggacatggaagcaatgcgagctttggaa
aaggaaatgtccgagcagatgaaaaagcaatcgcgtattattattattattcatttgaac
tgcaaacgaaaaccactgcaagtagacgacgagttgaaaatggaaaatcagaacgatgtt
gatcagtcatcagtttcttatacggatgtggatggaatgtctgaggagacaaatactgca
gaactggaagatgaatgtgtgaaaagtgaaaattgcaagtcggttaataatggtgaaaaa
tcagaagaagatcacgaagattcgagcaacgtgagctcgtcaattcttcagatgaagtcg
ttcattgccaaattgccgctgctcataaatcgcgatatgatcgaccaagcggccattgaa
tatgcgactcatctgaatacaaaatcaaatcgtagacgtttaattaagacccttttcgaa
gtgcatcgatctagattggatctgttgccattctatagtcgtttgattgctattttggac
cccgtttttccagatatccgaaatgaaatttgccatttgctgatttctcagtttcgacat
cacatccgcaaaaaagatcaagtgcaaattgaatcgaaagtgaaagtttgtcgttatatt
ggcgagttggtcaaatttggcattttcccaaaaagtgatgcattgttatgcttcaagcta
cttttgatggatttccgtcaccataacattgaaatggcttgtgcgatacttgattcttct
ggttattatttgtttcactcgtcagatagtcatctgaagatgaaatttttgttggaacaa
atgaagcgtcgtgctgagacgttatacctcgacttcagatatcagggaatgatcatgaac
gcctattacacttgttatccagaatcggttcaacctattgttgaatcctgtgatcaggtt
gaagtgccaatcgtgtttaaatacatttggcatttggtcagcaatagaacagtgctgaaa
gaagtggaatttgtattgaaggaaatgcaaaaaattgactggagcgacgcgaatgttcga
accgtggctattgcgagcacagtatttcaactgcatcgcaagcgtgctgtgtggtattgc
agagttttatcccatcgtcggagttcgtgtaagtttgtagcggataatgtattggaaatt
tttcgaagttcacttgaatcagattctatgctgaatcaacagcagcgcatgtcgttgtgc
atgtacatgggcgagctgtacaattataagttgatcaacacgtcggcatatttcagttcg
ttgtatttgttgttgacgttgaatgtggaaagcgtagagggggcggatatgcccacgccg
gtcgaaggactgtttcgcattcggttagcttgtgcaatgttgcagttgtgtggctcgtat
ttttcccgtggagttggggcgcagaagatgacttgttatttgaaatatttgcagcagtat
tgtttgcgtcaagctagcagggaatgttggaaaaacgatgagtcagcggttttgaaagtg
aaagcgttgctgaaggagacgattgagggattgcgaaaacatggttttgtcatcttcagc
acattggaagaggcgaacgaagcgatcagcgctatggaagctgactgtcggactcgaatg
gaacatctagtgaaaacgaggtacagctgtaacgattcagccatgcacgaaatgtatgag
ttggaagaacagttacctgacagtggtgaattggatgttgacgttgcacaaatcgttcaa
gagccagaagatcctatgactagtgaacaaaaggtgaaatttttgttgttaaccaaaaac
aaaagcaacaggtccgttgtgaagacaatccaggtgccagagggatcggatttggcgatg
aattggaaacatcgtgaagccgcagcattaaaggaaaaagagcgtatgaaaaggcttacc
cttaacatgactcagcggatgcagtatgaagataatgctgatgcaaatcagtcgccgcat
accaatgcggatacatttttggaatcgaaaaagtcttttatcggttatcaaatgaagcag
acaaatacgaaagaatttccaggaaattctagagaaatgaacagtaatggttggttttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (46)   

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