KEGG   Trichinella spiralis: Tsp_03678
Entry
Tsp_03678         CDS       T01609                                 
Name
(RefSeq) putative RNA recognition motif protein
  KO
K12897  transformer-2 protein
Organism
tsp  Trichinella spiralis
Pathway
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_03678
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tsp01009]
    Tsp_03678
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_03678
Protein phosphatases and associated proteins [BR:tsp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     Tsp_03678
Spliceosome [BR:tsp03041]
 Common components
  Common spliceosomal components
   SR proteins
    Tsp_03678
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7 FMP27-BLTP2_C CDC45 DUF4363
Other DBs
NCBI-GeneID: 10910147
NCBI-ProteinID: XP_003374482
Position
Unknown
AA seq 214 aa
MGDYNSDSEPEREYSEERRTSRVKEESSNRSRRRSRSASRSRSRSRSRGKRRGRSSSRSA
SRSRSRSGERNSSSRVHIGDIDDTITKADLEDAFSKFGKISEIWLATYAPFYAFIVYKTR
EDAEEAVHRLNGSYIRNCKVRVSLALPRRRYGPRSDWRPPPRGYSMRRNYDYGSGYYDSY
DRRDYYDRRYEPRSSYRRTRSPYYDRYDRYSRSP
NT seq 645 nt   +upstreamnt  +downstreamnt
atgggagattataacagtgacagtgagcctgagcgtgaatatagtgaagaaagacggaca
agtcgtgtaaaggaagaatcttccaatcgttctcggcgtcgttctcgttcggctagccgg
agtcgtagtcgtagccgttcacgtggcaagcgtcgtggtcgcagcagctcgcgctcggct
tcgcgcagtagaagccgttctggcgagcgtaacagcagttctcgcgttcatattggggat
attgatgatacgattacaaaagcagatttagaagacgcttttagcaaatttgggaaaata
tccgaaatttggcttgcaacgtatgcaccattttacgcttttattgtgtacaagactcgt
gaagatgcagaggaagcggttcatcgattgaatggcagttacattcgaaactgtaaagtt
cgagttagtttggccctaccacgtcgtcgttatggtccaaggtctgactggcgtccacca
ccgcgtggctatagtatgcgtcgtaattatgattatggtagtggttattatgattcatac
gatcgtcgagattactatgatcgtcgatacgagcctcgcagcagttacagacgaactcgt
tctccatactatgaccgttatgatcgctacagccgcagcccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (174)   
   KEGG ORTHOLOGY (1)   
   RefGene (170)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (187)   

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