KEGG   Trichinella spiralis: Tsp_07508
Entry
Tsp_07508         CDS       T01609                                 
Name
(RefSeq) hypothetical protein
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
tsp  Trichinella spiralis
Pathway
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_07508
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_07508
Enzymes [BR:tsp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     Tsp_07508
Spliceosome [BR:tsp03041]
 Complex C
  Other components
   Step II factors
    Tsp_07508
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 SLFN-g3_helicase ATPase nSTAND3 Flavi_DEAD T2SSE AAA_24 AAA_16 SRP54 ABC_tran
Other DBs
NCBI-GeneID: 10901972
NCBI-ProteinID: XP_003381818
Position
Unknown
AA seq 1492 aa
MEDEDSKAVIGDDDRSLHRLEGSKQTGGGLVIKKRKEDNKSLDPKVSLLGLDKLAEAKRA
ERRKEVEEREKVRRIMDKRHYRSTDEDLGSGVTDSVRGRISNWVEKRNHDEGRGLAASSK
KATKRGHRRDVKREQDVDDDDDNCGWSSKRKSRPQQPATPLFKVPFTPSRCRWDDEEVYR
AQSGGRFRSRDLPWNSPAPGLVRPTSSSEMSQTERWRRQHPGSCSYRDDREDEEEGRIIF
SSAQEREEWEDEQRRLDRDWYAMEEAQECLDEEHNPFYWVSDEYRKRREEHFEEQQQNKM
KKNKKPLTARQLQIKKDNEKWENNRLFRSGIIDKLELEEDELLLEEDAESRVNLLVQNLV
PPFLDGRIVFTKQPEPVVPVRDPTSDMAIIARKGSAAIRAWREKEERRRDQEKHWQLGGT
QLGNLLGITKQQSDSNSQQVGGGTEADFADDYKARNRFAEHMDNDGAGSAGDGTAGGGAS
EFTQKKSLKEQREFLPVFAVRQRLLNVIRENSVVVVVGETGSGKTTQLSQYLFEDGYADR
GLMIGCTQPRRVAAMSVARRVADEMGVALGEQVGYAIRFEDATSPATVLKYMTDGILLRE
CLREPDLDHYSVVIMDEAHERSLNTDVLFGLLKEVLARRRDLKLIVTSATMDAAKFADFF
GNVPVFNIPGRTFPVQVSHSKLVVDDHVQAAVKQAVSVHLGAPLPGDILIFMPGQEEVEA
TCALIAQRLDQLDDAPPLSVLPIYSQLPADLQARIFHRAVDNSRKCVVATNIAETSLTLD
GILFVIDPGYCKLKVFNPRIGMDALQVFPISQASANQRSGRAGRTGPGQCYRLYTERQYE
EELLPNTVPEIQRTNLSNVVLLLKSLGVDDLLKFHFMDAPPQDNLLNSMYQLWTLGALDN
TGQLTKLGRRMIELPLDPTLSKMLIVACEMGCSEEVLTVVSMLSVPSVFYRPKGREEDGD
AKREKFQVPESDHLTLLNVYQQWRVHRYSASWCADHFVHVKAMRKVREIRAQLKDIMDQQ
KMPIQSCGTDWDIVRKCICSAYFHNAARLKGIGEYVNLRTGIPCFLHPTSALFGMGYTPD
YVVYHELVMTAKEYMQCVTAVDGYWLAELGPMFYTVKESGSSRKENRIRALKDMETMERE
MRDAQQQIDEQKAKQEAALRAQWKTPKIATPGRVDPTKSTPHRTGRFGLQTAIWLIRVKK
QRFLGRSASAHVTSRMTSAHSCFGYCEEVFAHVRLFRVGSVVIVLRRATHPISQRMAVQT
HAGDVDVDYIVLLGDQSPEQLDKSGGSEARTAGDVEPAQQGTIIAQSNQGRIANKARTAD
GQFAQSVVLDHGKQKSIVEHMHGMTVDQAQNLEPFQFTNAEQSQLAVDGHGQIVHVQRIQ
MGASVEEHTKNHRIQSVFGFREDVVVDEDRPQILTRNSEHHVQQLPASETVRLAGAQAHR
QAHRTEVHGRAEVELCVAFVAHEHQFQAGQRTQLPTQQIEPTTTDQTARESV
NT seq 4479 nt   +upstreamnt  +downstreamnt
atggaagatgaagacagtaaggcggtaattggggacgatgatcgttcgttgcatcgtctc
gaagggagcaagcagactggcggtggtttggtgatcaaaaagaggaaagaggacaacaaa
tcgttggatccgaaagtgtcgctgttgggtttggataaattggcagaagcgaaaagagcc
gaaaggaggaaagaagtcgaggaacgtgaaaaggtgagacgaattatggacaaacgtcat
tatcgatcaacagatgaagatcttggaagcggcgtgaccgacagtgttcgtggtcgtatt
tcaaattgggtagagaaacgaaatcacgatgaagggcgtggtttggcggcatcgtcgaag
aaggcgacaaaacgtggtcatcgtagagatgtgaaaagggaacaagacgttgacgacgac
gacgacaattgtggttggtcttcgaaacggaaaagcagaccacagcagccggcaacgcca
cttttcaaggttccattcacgccatctcgatgtcgttgggacgacgaagaggtgtacaga
gcgcagagcggtggacgattccgaagtcgagatttgccatggaacagtccggcgccaggc
ctggtcagaccgaccagttcgtcggagatgagccagaccgaacgttggcgtcgacaacat
ccgggcagttgctcgtatcgtgacgaccgagaagatgaggaagaggggcggataattttc
agcagtgcacaggaacgtgaagagtgggaagacgaacagcgtcgtctggatcgcgactgg
tatgcgatggaagaggcgcaagagtgtttggacgaagagcacaatccgttctactgggtg
tcggatgagtacaggaaaagaagagaggaacatttcgaagagcagcagcagaacaaaatg
aagaagaacaaaaagccgttgacggctaggcagttgcaaattaaaaaagacaacgaaaag
tgggaaaacaaccgcctgtttcgcagcggtatcatcgacaagttggaattggaagaagat
gaacttttgttggaagaggatgccgaaagtcgggtgaatttgttggtgcaaaatttggtg
ccgccctttttggacggtcgaatcgtcttcaccaaacaacccgagccggttgtgccggtc
cgtgatccgacgtccgacatggcgatcatagcgcgcaaaggtagcgctgcgatcagggcg
tggcgcgaaaaagaggaacgacgccgtgaccaggagaaacactggcaactgggcggtacc
cagttgggcaatttgttgggcattaccaagcagcagtcggattcaaattcacagcaagtt
ggtggtggaacagaggcggattttgccgacgattacaaggcgagaaatcgattcgccgag
cacatggataacgacggtgccgggtcggccggcgatgggaccgcgggcggtggcgcgtcg
gaatttacgcagaaaaaaagcctgaaagagcagagggaatttttgccggtgttcgcggtc
cgacagcggctgttgaacgtcatccgcgaaaacagcgttgtggtggtggtcggcgagacc
ggcagcggcaagaccacccaactcagccaatatttgttcgaagacggctacgcggaccgg
ggcttgatgatcggctgcacgcagccgaggcgcgtggcggccatgtcggtcgccagacgg
gttgccgacgagatgggcgtggcgttgggcgagcaggtcggctacgctatacgtttcgaa
gatgccacgtcgccggcgacggtgctcaaatacatgacagacgggatattgttgcgcgaa
tgtttgcgcgagccggatctcgaccactacagcgtcgtgatcatggacgaagcccacgag
cgatcgttgaacaccgacgtgctgtttggcttgttgaaagaggtgctggccaggcgtcgg
gatttgaaattgatcgtcacgtcggcgaccatggatgcggccaagttcgccgactttttc
ggcaacgtacccgtcttcaacatacccggccgcacgttcccggtccaagtgtcccacagc
aagctggtggtcgacgaccacgtccaagcggccgtcaagcaggcggtcagcgtccacttg
ggtgccccgttgccgggcgacattctcatcttcatgcccggccaggaggaggtcgaggcg
acttgcgccttgattgcccaacgtttggaccagttggacgacgcgcccccgttgtccgtt
ttgccaatctattcccaattgccggccgacctgcaggcgaggatattccaccgcgccgtt
gacaacagtcgcaagtgcgtcgtggcgaccaacatcgccgaaacgtcgctcacgttggac
ggtatactgttcgtcatcgaccccggctattgcaagttgaaggtgttcaacccgcgcatc
ggcatggacgctttgcaagtgttcccgatcagccaggcgagcgcgaaccagcgttcgggt
cgagccggccgcaccggacccggccaatgttaccgcctctacacggaacgccagtacgaa
gaggaactgctgcccaataccgtacccgagattcagcggaccaacctgtcgaacgtggtg
ttgttgttgaaatcgctcggcgtggacgatctgttgaaattccacttcatggacgcaccg
ccccaagacaacctactcaactcgatgtaccagttgtggacgttgggcgcgctggacaac
accggccagttgaccaaactcggacgccggatgatcgaactgccgctcgacccgaccctg
tccaaaatgctcatcgtcgcctgcgaaatgggctgcagcgaagaagtgctgaccgttgtg
agcatgctgtcggtgccgtcggtattctaccgacccaagggtcgagaagaggacggcgat
gcgaagcgggaaaaattccaagttcccgaaagtgaccacttgactctgctcaacgtgtac
cagcagtggcgggtgcacaggtacagtgccagctggtgcgccgaccactttgtccacgtg
aaagcgatgcgcaaagtgcgcgaaatacgggcccaattgaaggacatcatggaccagcag
aaaatgcctatccaatcctgcggtaccgactgggatattgttcgcaagtgtatctgttcg
gcgtattttcacaacgcggccagattgaaaggcattggagaatatgtcaatttacgtact
ggaataccttgtttcttgcatccgaccagtgcactgttcggcatgggctacacgccggat
tatgtcgtctaccacgagctggtaatgaccgccaaagagtacatgcagtgcgtgaccgcg
gtcgacggctactggttggccgaactgggtcccatgttttacacagttaaagaatctggt
tcgagtcgaaaagaaaatcgtattcgggcactgaaagatatggaaactatggaacgtgaa
atgcgcgatgcacagcaacaaatcgacgagcaaaaagccaaacaagaagctgcccttcgt
gcgcaatggaaaacccccaaaattgccacgcctggtcgtgtcgatcccaccaaaagtact
ccacatcgtactggccgttttggcttacaaactgcaatttggttaattcgtgtaaagaag
caacgttttcttgggagaagtgcatctgcgcatgtaacaagccgaatgaccagtgcccat
tcgtgtttcggatattgcgaggaggtgttcgcgcacgtccgactcttccgagtgggcagc
gtcgtcattgtcctgcgtcgagcgacacatccaatatctcaacgaatggccgtccaaacc
cacgccggtgacgttgacgtagactatatcgtgctgcttggtgaccagtctcctgaacag
ttggacaaatccggcggcagtgaggctcgaacagccggtgacgtcgagcctgcgcaacag
gggacaataattgcccaaagcaaccagggtcgaatcgctaataaagctcgtaccgctgac
ggtcaattcgcgcaaagtgttgttcttgatcacggaaaacagaagtcgatcgttgaacac
atgcatgggatgacagtcgaccaggcgcaaaatctggagccgtttcaattcaccaatgcg
gaacagagtcaattggcagttgacgggcacggtcaaattgtccatgtgcaacgtatccaa
atgggggcaagtgtcgaagagcatacgaaaaatcaccggatccagagcgtattcggtttt
cgagaggatgtggtcgtcgatgaagatcgaccgcagatactgacccgaaattccgagcac
catgtccaacaactgccggcgtctgagacggtgcgactggcaggcgcacaagctcatcga
caagcacaccgcaccgaagtgcatggacgggccgaagtagagctctgcgtcgcatttgtc
gcccacgaacaccaattccaggctggtcaacgaacgcaactccccacccaacagattgaa
ccaacgacgacagaccaaactgcacgagagtcggtctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (70)   
   KEGG ORTHOLOGY (1)   
   RefGene (66)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (93)   

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