KEGG   Trichinella spiralis: Tsp_09788
Entry
Tsp_09788         CDS       T01609                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tsp  Trichinella spiralis
Pathway
tsp03020  RNA polymerase
tsp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Tsp_09788
  09124 Replication and repair
   03420 Nucleotide excision repair
    Tsp_09788
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_09788
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_09788
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     Tsp_09788
  RNA polymerase III system
   RNA polymerase III
     Tsp_09788
  RNA polymerase I system
   RNA polymerase I
     Tsp_09788
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Tsp_09788
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 10898411
NCBI-ProteinID: XP_003374431
UniProt: E5SPB3
Position
Unknown
AA seq 211 aa
MAEDDREIFRLWKIRHNAFQMCRDRGFLVTSNELDQNFEDFVRQYGDRPSEGKPARSDLS
FLVSHEEDAAENLFVYFADEKKVGIKTIKNVCLRLQSENMSRAIMIVQEPMTAIARHSVA
DLSPKYRLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRYKIKEHQLPRIQSTDPI
ARYYGVVRGQVFKIIRPSETAGYYVSYRVVV
NT seq 636 nt   +upstreamnt  +downstreamnt
atggccgaagatgacagagaaatatttcgcctttggaagatacggcacaatgcatttcaa
atgtgtcgtgatcgcggttttctggtcacatcgaacgaactagaccaaaattttgaagat
tttgtacgacagtatggggatcgaccaagcgaaggaaaacccgccagatcggatttgagt
ttccttgtttcgcacgaagaggacgctgctgaaaatctatttgtttattttgctgatgag
aaaaaagttggcataaagaccataaaaaacgtctgtctacgcctccagagtgaaaatatg
agtagagctattatgattgttcaagaaccgatgacggccatagcccgacattcagtagcg
gatctctcccctaaatataggttagaacaatttttggaggccgaattgatggtaaatata
atacggcacgagcttgtaccacggcatgtcatcatgtccagtaaagaaaaggacgaactg
ttggacaggtataaaatcaaagaacatcaactgccgaggatccaaagcactgacccaatt
gctcgttattatggcgttgttcgcggacaggtatttaaaataattaggccatcagagact
gctggctattacgtgtcttatcgtgttgttgtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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