KEGG   Trichinella spiralis: Tsp_11661
Entry
Tsp_11661         CDS       T01609                                 
Name
(RefSeq) putative radical SAM domain protein
  KO
K15865  threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tsp03016]
    Tsp_11661
Enzymes [BR:tsp01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     Tsp_11661
Transfer RNA biogenesis [BR:tsp03016]
 Eukaryotic type
  tRNA modification factors
   Methylthiotransferase
    Tsp_11661
SSDB
Motif
Pfam: UPF0004 Radical_SAM TRAM SPL
Other DBs
NCBI-GeneID: 10903198
NCBI-ProteinID: XP_003371453
Position
Unknown
AA seq 542 aa
MSPVTHLPDDIEDVFSDLLASRERKDVKLNNGYKKHLWPGKACADSFIPGAFSVYVKTWG
CTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQHVQNELEKARALNKP
VIVSGCVPQAEPSIPWLQGVSLVGIQQIDRIVEVVEETLKGNTVQLLNYKKVKGKRTAGA
RLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASYSIEEIIDRAESCISEGVKE
IWLTSEDLGAYGRDIDCTLPELLKALTAKLPDGVMLRLGMTNPPFHIPISVQEIGEILNH
PCVYSFLHIPVQSGSDAVLRDMRREYNVDDFCAVVEFMRKKVPGITIATDVICGFPTETE
QDFKDTLDLVEKYRFASLFINQFYPRPGTPAAKLKRLDTAVVKDRTRRMTQLFNSYEPYR
NRVGLKYQVLITERSFRGDDYLVGHNKFYEQILVANQPNLLGKKVWVKIVSCSKHSMVGE
LTAQPATYFSNIWHFCSSPIKDSSIVTLNNNTSAFYATCTDFKILLNSESLTFYSMLNET
LK
NT seq 1629 nt   +upstreamnt  +downstreamnt
atgtcaccagttactcacctgcctgacgatattgaggatgttttctctgatcttcttgct
tcacgtgaacgaaaagacgttaagctaaataatggctacaaaaaacatttatggcccggg
aaagcatgtgctgatagttttattcctggtgccttttcagtatacgtaaagacatggggt
tgtacgcataacagcagtgattcggaatatatggctggtttgatgagtagtgctggttat
ggaattgtcgatgatccctcagtggcagatatatggttgttaaatagttgtacagttaag
acaccttcagagcagcatgtgcaaaatgaattagaaaaagcgagagcgctgaacaagccg
gtaatcgtgtccggctgtgtaccgcaagcggaaccttcgattccttggcttcaaggtgta
tctttggtgggaattcaacaaatagaccgtatagtagaggtggttgaagaaacgttgaaa
gggaacacagttcaactgctcaactataaaaaagttaaagggaaacgaaccgctggtgca
cgattggatttaccaaaagttcgtcgaaatccacttgttgaaattatagcaatcaataca
ggctgtttaaacaattgcacgtattgtaaaacgaaaaaagctcgcggcaatttggcaagc
tattcaatcgaagagataattgaccgagctgagagttgcattagtgaaggggttaaagaa
atttggcttacctctgaagatctgggcgcttacggtcgcgacatcgattgcacattgcct
gaactgttgaaagcactgacagcaaaacttcccgatggagtaatgctacgcttgggcatg
accaatccgccttttcacatccctatttctgttcaggaaattggagaaatcctcaatcat
ccttgtgtatattcttttcttcacattcctgttcaatctggtagcgatgctgtgctccga
gacatgcgaagagagtacaacgtcgatgatttttgtgctgttgttgaattcatgcgaaaa
aaagttcctggaataacaattgcaacggatgttatttgtggctttccaactgaaactgaa
caagatttcaaagacacactggatttggtggaaaagtatcgttttgcaagtttattcatc
aaccaattttatcccagacctggaacgccggctgcaaagctcaaacgactcgacactgct
gttgttaaagatagaaccagacgaatgacacagctgttcaattcctacgaaccgtaccga
aatcgggttggtttgaaataccaagtactgatcactgaacgttcttttcgtggtgacgac
tatctcgtgggacacaataaattttacgaacagatcctagttgctaatcaaccaaatttg
ttgggcaaaaaggtctgggtgaagattgtatcctgttcaaagcacagtatggtcggcgag
ttaacagctcaacctgctacctacttttcaaatatttggcatttttgctcgtcaccaata
aaagatagcagcattgtgactttgaacaacaacacttccgcattttatgcaacatgcact
gatttcaaaattttactcaactctgaaagtttaacattttattcaatgttaaatgaaaca
ttgaaatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (45)   

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