KEGG   Trachemys scripta elegans (red-eared slider): 117888584
Entry
117888584         CDS       T07347                                 
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
  KO
K04840  voltage-gated sodium channel type VIII alpha
Organism
tst  Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:tst00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:tst04040]
    117888584 (SCN8A)
Ion channels [BR:tst04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   117888584 (SCN8A)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc Na_trans_cytopl PKD_channel ATP-synt_B GPHH Lustrin_cystein
Other DBs
NCBI-GeneID: 117888584
NCBI-ProteinID: XP_034648009
Position
16:11961960..12077550
AA seq 1988 aa
MAAQLLAPPGPDSFKPFTPESLANIEKRIAEEKKKRPKQDSSHRDDDDDSKPKPNSDLEA
GKNLPFIYGDIPKGLVAVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILTPFNLL
RRIAIKILIHSLFSMIIMATILTNCVFMTFSNPPEWSKNVEYSFTGIYTFESLVKIIARG
FCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINLNESFLENGTRGFD
WQEYTNNVSNFYTIPGALDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAFL
ALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQAT
LEEAEQKEAEFKAMLEQLKRQQEDAQAAAMATSAGTVSEDAVEDDGRGRGSRSSSEISKL
SSKSDKERRNRRKKRKQKELLEGEEKGDNEKVFKSESEDGMRRKTFRLPDNRLGRKFSIM
NQSLLSIPGSPFLSRHNSKSSIFSFRGRFRDPGSENEFADDEHSTVEESEGRRDSLFIPF
RGRERRSSYSGYSGYSQGSRSSRIFPSIRRNVKRNSTVDCNGVVSLIGGPASNRPMGRLL
PEVKINKAATDDSGTTEVEIKKKPTGSLLVSMDQLNASYGRKDRTNSIMTVVTNTLVEEL
EESQRKCPPCWYKFANTFLIWECHPHWIRLKEIVNMIVMDPFVDLAITICIVLNTLFMAM
EHHPMTPEFQDVLTVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMEL
GLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKINVECVLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAM
CLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQIAVIRIKQGIAWIK
AKAHEFMQAHFKQREGDEVKPLDELYEKKVNCIANHTGADINRDIDYQKNGNGTTSGIGS
SVEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDFSSDTDPNGSKEKLDDTSSS
EGSTIDIKPEVEEVPVEAPEEYLDPDACFTEGCVQRFKCCQVSIEDGLGKSWWTLRKTCF
LIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTMLEYADKVFTYIFILEMLLKWC
AYGFVKFFTNAWCWLDFLIVAVSLVSLVANALGYSELGAIKSLRTLRALRPLRALSRFEG
MRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEERFDIEIVNN
RTDCEALMPPNSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQP
KYEDNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPLNSIQGAVFDFVTQQAFDIFIMMLICFNMVTMMVETDTQSNRMSD
ILWWINLVFVILFTCECVLKMFALRHYYFTIGWNIFDFVVVILSVVGMFLADIIEKYFVS
PTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSN
FAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSSF
KGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIW
EKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFT
KRVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEDVSAVVIQRAYRVRLAK
RGFICRKSASTKLENGGTNREKKEGTPSTASLPSYDSVTKPEKEKQLRVEEGRRERAKRQ
KDLKESKC
NT seq 5967 nt   +upstreamnt  +downstreamnt
atggcagcgcagctgctcgcaccaccaggccctgatagttttaaacctttcaccccagag
tctctggctaacattgagaagcgcattgcagaggaaaagaagaaacgtccaaagcaagac
agcagccatcgggatgacgacgacgacagcaaaccaaaaccgaacagtgacctggaggca
ggaaaaaatctgcctttcatctatggggacatcccgaaaggtctggttgctgtaccactg
gaggactttgacccgtattatttgacccagaaaacctttgtagtactaaacagagggaaa
acactcttccgatttagtgccacacctgccttgtacattttaactccttttaatctgctt
aggagaatagctattaaaattttgatacattcattatttagcatgatcattatggccact
attttgaccaactgtgtattcatgacttttagtaacccacctgaatggtcgaagaatgtg
gagtactcattcactggtatttatacatttgaatcacttgtgaaaataattgcaagaggt
ttctgcatagatggttttactttccttcgcgatccatggaactggctagatttcagtgtc
atcatgatggcatatgtcacagagtttgtggaccttgggaatgtctcagcattgagaact
ttcagagttctccgagctttgaaaactatctctgttattccaggcttgaagaccattgtg
ggtgccctaattcagtctgtgaagaaactgtcagatgtaatgattttgacagtgttttgc
ctcagtgtctttgctttaatcggcctgcagctgtttatgggcaatttgaggaacaagtgt
gtaatatggccaattaacctcaatgagagcttcctagagaatggcaccagggggtttgac
tggcaagaatacaccaacaatgtctcaaacttttacacaatccctggggcccttgatcct
ttactctgtggtaacagctcagatgcaggccaatgtccagagggttacacatgtatgaaa
gcaggaaggaatccaaactatggctacacaagctttgacactttcagctgggctttccta
gccttatttcgccttatgactcaggatttttgggaaaacttgtatcagttaactttgcga
gcagcaggaaaaacttacatgatattctttgtcctggttatctttgtggggtcattctat
ctggtcaatctgatcttggctgtggtagccatggcttatgaagagcagaaccaggccaca
ctggaggaagcggagcaaaaggaagcagaattcaaggccatgttggaacagctgaaaagg
cagcaggaagacgcacaggctgctgccatggccacttcggcagggacagtctcagaagat
gctgtggaggatgatggcagggggagagggtctcggagctcttctgagatttccaaactc
agttctaagagtgacaaggagcggcggaacaggaggaagaaacggaagcagaaggagctg
ttggaaggagaggagaagggtgacaacgaaaaggtgttcaagtctgaatcggaggatgga
atgaggagaaagacttttaggctgccagacaacaggctgggaaggaaattttccatcatg
aaccagtcccttctcagcatcccaggctcccctttcctctcccggcacaacagcaaaagc
agcatcttcagcttcagagggcgcttccgtgatccaggttcagagaacgaatttgctgat
gatgagcacagcacggtggaggagagcgaaggcaggagagattcccttttcatccccttc
cgtggccgggaacggagaagcagctacagcggctacagtggctacagtcagggcagccgg
tcctcacggatctttcccagcatccgccggaacgtgaaaaggaatagcacagtggattgt
aatggcgtggtgtcccttattggcggcccagcatccaataggcccatgggacgccttctg
cctgaggtgaaaataaataaggcagctaccgatgacagtggtactactgaggtggaaatt
aaaaagaaacctaccgggtctctcttggtctcaatggatcaactgaatgcatcttatgga
agaaaggatcgaaccaacagtataatgactgttgtaactaatacccttgtagaagagttg
gaagagtcccagaggaagtgtcccccctgttggtacaaatttgccaacaccttcctgatc
tgggagtgccacccacattggatcaggctgaaggagatagtgaacatgattgtcatggat
ccctttgtcgacctggccattaccatctgtattgtgctgaacactttgtttatggcgatg
gaacaccatcccatgacccctgagtttcaagatgttctgactgtaggaaatctggttttc
actggaattttcacagcagaaatgttcctgaagctcatagccatggacccctactattat
ttccaagaaggttggaacatttttgacggatttattgtctccctcagtttaatggaactg
ggtctagcagacgtggaagggctttcagtgctgcgatctttccgattgctgagagtcttc
aagctggcaaagtcctggcccactctgaacatgctgataaaaatcattggtaactcagtg
ggtgccttgggaaacctgaccttggtgctggccatcatcgtgttcatctttgctgtggtg
ggcatgcagctctttggcaagagctacaaggaatgtgtctgcaagatcaacgtggagtgt
gtgctgccccgatggcacatgcacgatttcttccactccttccttattgtcttccgtgtg
ctgtgtggggagtggattgagactatgtgggattgtatggaagtggcaggacaggccatg
tgcttgattgtcttcatgatggtcatggtcatcgggaatttggtggtgttgaacctgttc
ttggccttgctgctgagctctttcagtgcagataacttagcagcgactgatgatgatggg
gagatgaacaacctacaaatagcagtcattcgcatcaagcagggaatcgcctggatcaag
gcgaaagcacatgagttcatgcaagcgcatttcaagcagagagagggggatgaggtcaaa
cccttggatgagttgtatgaaaagaaggtgaactgcatcgctaaccacacaggggctgat
atcaacagggacattgattatcaaaagaatggcaatggcaccaccagtgggattgggagc
agtgtggagaaatacatcatagacgaagaccacatgtcctttatcaataatcccaatctc
accgttcgggtacccattgccgtgggtgagtcagacttcgaaaacctcaacacagaagac
ttcagcagtgatacagatcccaatggcagcaaggagaaactggatgataccagctcttct
gagggcagcaccattgatataaagccagaggtagaggaagtccctgtggaggcaccagaa
gaatatttggacccagatgcatgcttcacagaaggttgtgtgcagcgctttaagtgctgt
caggtcagtattgaagatgggctgggcaaatcctggtggaccttgaggaagacctgcttt
ctgattgtggagcacaactggttcgagactttcatcatcttcatgatcctattaagcagt
ggagccctggcctttgaggatatttacatagaacagagaaagaccatccggaccatgctg
gagtacgcagacaaggtcttcacctatattttcattctggagatgttgctgaaatggtgc
gcctacggattcgtcaagttcttcaccaacgcctggtgctggctggatttcctcattgtg
gctgtctctttagtcagccttgtagctaatgccctgggctactcggaactaggtgccata
aagtcccttaggacactaagagctttgaggcctttaagagcgttgtcccgatttgagggg
atgagggtggttgtcaacgccctggttggcgctatcccttccattatgaatgtgttgttg
gtctgccttatcttctggctgattttcagcattatgggggttaacctgtttgctgggaaa
taccattactgctttaacgagacagctgaggagcgcttcgacatagagatagttaacaac
aggaccgattgtgaagcattgatgccacccaactccactgagatccgatggaagaatgtg
aaaattaactttgacaatgttggggcaggatacctggctcttctccaagttgctactttc
aagggctggatggatatcatgtatgcagcagtagattccagaaagcaagaagagcaaccc
aagtacgaggacaacatctacatgtacatctactttgtaatcttcatcatctttggctcc
tttttcaccctgaacttgtttatcggtgtcatcattgataacttcaatcaacaaaagaaa
aagtttggaggtcaggatatcttcatgacagaagagcaaaagaaatactacaatgccatg
aaaaaactgggctcaaagaaacctcagaaacctattccccggcctctgaacagcatccaa
ggagctgtctttgactttgtcactcagcaagcattcgatatattcatcatgatgctcatc
tgcttcaacatggtgaccatgatggtggaaacagacacacagagtaaccggatgtcagac
atcctgtggtggatcaacctggtgtttgtcatcctcttcacctgtgagtgcgtgctgaag
atgtttgccttgcgacactattatttcaccattggatggaacatttttgacttcgtggtt
gtgattctgtccgttgtgggaatgttcctggctgatatcattgagaagtattttgtgtcg
cccactctcttccgagtcatccgactagcccgtattggccgcatcctgcgtctgatcaaa
ggggccaaggggatccgcaccctgctttttgccttaatgatgtccttgcctgccttgttc
aacatcggcctcttgctgttcctggtcatgtttattttctccatctttggcatgtcgaac
ttcgcctacgtaaagcatgaggccggcatagacgacatgttcaactttgagaccttcggc
aacagcatgatctgtttgttccagatcaccacctcggctggctgggatggcttgttgttg
cctatcctgaaccggccgccggactgcgacctagataaggagcatcctgggagcagcttc
aagggagattgtggtaacccctccgtggggatctttttcttcgtcagctacatcatcatc
tcctttctgattgtggtgaacatgtacatcgctattattctggagaacttcagtgtggcc
acggaggagagtgctgacccgctgagtgaggacgacttcgaaacgttctatgagatctgg
gagaagtttgaccctgatgccacacagttcattgagtactgcaagctggcagactttgcc
gatgctttggagcacccactccgtgtccctaaacctaacactattgaactcatcgccatg
gacttgcctatggtaagcggggacagaatccattgcctggacatcctgtttgccttcacc
aagcgtgtgctgggggacagtggggagctggacatcctgaggcagcagatggaagaaagg
tttgtggcgtctaacccttccaaagtgtcttatgagcccatcacgaccactctccggcgc
aagcaggaagacgtctcggcagtggttatccaacgggcttacagggttcgcttagcaaaa
aggggctttatttgcaggaagtctgcctctactaagctggaaaacggaggaacaaatcgg
gagaaaaaagaaggcaccccgtccaccgcatccctcccatcctatgacagtgtaactaaa
cctgaaaaggagaaacagctgcgggtggaggaaggaagacgagaacgagcaaaaagacaa
aaagatttaaaggaatccaagtgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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