KEGG   Treponema succinifaciens: Tresu_2461
Entry
Tresu_2461        CDS       T01461                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
tsu  Treponema succinifaciens
Pathway
tsu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tsu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Tresu_2461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsu03021]
    Tresu_2461
   03400 DNA repair and recombination proteins [BR:tsu03400]
    Tresu_2461
Enzymes [BR:tsu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Tresu_2461
Transcription machinery [BR:tsu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Tresu_2461
DNA repair and recombination proteins [BR:tsu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Tresu_2461
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AEB15323
UniProt: F2NTZ1
Position
complement(2621685..2625242)
AA seq 1185 aa
MFAKSKKIVRQYIGKDIQDFMELPNLIDIQLSSYEEFIQKGRIEKGEPLLNQGLQEVFTS
TFPIESPAGDMSLEYEFYELDYDGMKFTEQECKKKGVSYAVPLKARINLNFKETGAILQK
DIYMGDVPLMTDRGTFVINGAERVVVSQIHRSPGVIFQRDKGVLSSRIIPYRGSWLEFEI
DQKKELIYAKIDRKKKILGTIFLRALGYSTREEIINCFYVTEDVKIPSDLEKRDELAGRV
LGKPVIIKDEETGEEKKLFRAGDKLHPHDIDDLVANGIKEINVIKFNMKKRPDDKEEKNP
SLDSEMIVNCFEREEIVFSKEGSSTADEPTKEECLSKVYAVLMPGEPITVEAAERDLTTM
FFSVRRYDLGRVGRYKLNKKFDYKEPVEDVTLTKEDIINTMKHLIEVYIGDEPLDDIDHL
GRRRVRSVGELLTNQFKTAFARMERIAKDRMNLKETETLKPGDLISIKPIISSIREFFGS
SQLSQFMDQCNPLAELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPN
IGLIVSLAIFTRVNEYGFLEEPYRKVVNGKATNEVEYLDPMDEDKYYIGQVTEGMKADGS
FPTDLVSCRHRGDYTSRSPKDIQYMDVSPRQVISVSASLVPFLEHDDANRALMGCNMQRQ
AVPLLFPEPPHVGTGMEQKTAYDSGVLTKARRAGTVKWVESDLIKIKPDGVKGDVFDEYP
LLKYQKTNSDTVNHQRPTVQVGEHVEAGGVIADGPATFNGELALGRNILVGFVPWNGYNY
EDAVLISQRVVKEDMYTSVHIHEFQTEIRETKLGPERITRDIPNTSEKILDNLDSEGIVR
IGAKVRSGDILVGKVTPKSETETTPEFKLLNSIFGEKAKEVRDSSLKLPHGVQGVVIDIQ
RLKRSEGDELQPGVDEQVKVIIADKRKLVVGDKMAGRHGNKGVVARILPVEDMPYLEDGT
PLDVCLNPLGVPSRMNIGQIMESELGRAGLVLNEWYNSPAFQTPSQEQIAEKLVQAGLSP
DCKQIVHDGFTGEPFLNPIFVGVIYFMKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFG
GQRLGEMEVWALEAYGAANTLQEMMTIKSDDMNGRSKVYESIVKGEPTAPIGVPESFNVL
VQELRGLALDFTIYDDKGKQIALTERDQELIDKVGAGFDKENENA
NT seq 3558 nt   +upstreamnt  +downstreamnt
atgtttgcaaagagcaagaaaattgttcgccagtacataggaaaagacatccaggatttc
atggaacttcctaatcttatcgacattcagctttcttcctacgaagaattcatccaaaaa
ggcagaattgaaaaaggcgagccgcttttaaaccaagggcttcaggaagtttttacttca
actttccctattgaaagcccggccggtgatatgtcgcttgagtatgaattttatgagctt
gactatgacggaatgaaattcaccgagcaggaatgcaagaaaaagggtgtttcttacgca
gtacctttaaaggctcgcatcaatcttaattttaaagaaactggagctattctccaaaaa
gatatttacatgggcgatgttcctcttatgacagacaggggaacttttgttatcaatggc
gcagaacgcgttgttgtaagccagattcaccgttcgcctggagttatttttcagcgcgat
aagggcgttttgtctagccgcataattccttaccgcggttcttggctagaatttgaaatt
gaccaaaaaaaagagcttatttacgcaaaaatcgaccgcaagaaaaaaatcttgggaaca
attttcctccgtgcgcttggatattcaacacgtgaagaaattataaactgcttctatgtt
acagaagatgtaaaaattccttcagatttagaaaaacgcgatgagcttgcaggaagagtt
cttggaaaacctgtaatcataaaagatgaagaaaccggtgaagaaaaaaagttgttccgc
gcaggagacaagctccatccgcatgatattgacgatcttgttgcaaatggaatcaaggaa
atcaatgtaataaagttcaacatgaaaaaacgccctgacgacaaagaggaaaaaaatcct
tctttggacagcgaaatgattgtgaactgctttgagcgtgaagaaattgtgttctctaag
gaaggttcttctacagcggatgagcctacaaaggaagagtgtctttcgaaggtttacgct
gtcttgatgccgggcgagccgattactgttgaggctgcagaacgtgaccttacaactatg
ttctttagtgtccgccgctacgacttgggacgtgttggacgctacaagcttaataaaaaa
tttgactataaagagccggttgaagatgtaactcttacaaaagaagacatcatcaacaca
atgaagcatcttatagaagtttacattggagacgagcctctcgatgatattgaccacttg
ggccgccgccgtgttcgttctgttggcgaacttcttacaaatcagttcaagacagctttt
gcacgcatggagcgcattgcaaaggaccgcatgaacttaaaggaaacagaaactcttaag
ccgggcgacttgatttctataaagccgattatttcttctatccgtgaattctttggttca
agccagctttcgcagttcatggatcagtgtaatccgcttgcagaacttactcacaaacgc
cgtcttaacgcattaggaccgggaggtctttcacgtgacagggcaggttttgaagtccgc
gatgttcactatacccactatggacgaatgtgtcctattgaaactcctgaaggtccgaac
atcggtcttattgtttcccttgcgatttttacccgcgtaaatgaatacggcttccttgaa
gagccttaccgcaaagttgtaaacggaaaagcgacaaatgaagttgaatatcttgatcca
atggatgaagataaatattacattggacaggttacagaagggatgaaggctgacggctcg
ttccctacggacttggtttcttgccgccaccgtggagactacacaagccgttctccaaaa
gatattcagtatatggatgtttcaccgcgtcaggtaatttctgtttctgcttcacttgtt
ccgttccttgagcatgacgatgctaaccgcgcgttgatgggttgtaacatgcagcgtcag
gctgttccgcttttattcccggagcctcctcatgttggtactggcatggagcagaaaact
gcttacgattctggagttcttacaaaagcccgccgtgcaggaactgtaaaatgggttgaa
agcgatcttattaaaatcaagccggatggagtcaaaggcgatgtatttgatgaatatccg
ttgcttaaatatcagaaaacaaacagcgacactgtaaaccatcagcgtcctacagttcaa
gttggcgagcacgttgaagccggcggagtcattgcagatggtcctgctacattcaatggc
gagcttgcattgggacgcaatattcttgttggatttgttccgtggaatggatacaactac
gaggatgctgttcttatcagccagcgtgttgtaaaagaggatatgtatacttctgttcat
attcacgagtttcagactgaaatccgcgagacaaagcttggaccagagcgcattacacgt
gatattccaaacacttcagaaaaaattcttgataatcttgattctgaaggaattgtacgc
atcggcgcaaaagtccgctccggagacattcttgttggaaaagttactccaaagagcgaa
accgaaactacaccggaattcaagcttttgaattctattttcggtgaaaaggcaaaagaa
gtacgtgattcttcacttaagcttcctcatggagttcagggcgttgtaattgacattcag
cgtcttaagagaagcgagggcgatgagcttcagcctggcgtagatgagcaggtaaaagtt
attatcgcagacaaacgtaagcttgttgttggtgataagatggctggacgccacggaaac
aaaggtgttgttgcccgcattcttcctgttgaagatatgccatatcttgaggatggaact
ccactcgatgtttgcttgaatcctcttggtgttccttcgcgcatgaatattggacagatt
atggaatctgagcttggaagagccggtcttgttttgaatgaatggtacaattcgcctgca
ttccagacacctagccaggaacagattgcggaaaaacttgttcaggctggactttcaccg
gactgcaagcagattgtgcacgacggatttacaggcgagcctttcctaaacccaattttc
gttggtgttatatactttatgaagcttcaccatttggttgacgacaagatgcatgctcgt
tcaacaggtccatattctcttgttactcagcagccgttgggaggaaaagcccagttcggt
ggtcagcgtcttggagaaatggaagtttgggcgcttgaggcttatggcgctgcaaataca
ttgcaggaaatgatgacaatcaaatctgatgacatgaacggacgttctaaagtttacgag
tcgattgtcaagggtgagccaacagctccaatcggagtaccggaatcattcaatgttttg
gttcaggagcttcgcggtcttgcgttggactttactatttatgatgacaaaggcaagcag
attgcccttactgaacgtgatcaggagcttattgataaagtaggcgctggttttgacaag
gagaacgaaaatgcgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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