KEGG   Thermogutta terrifontis: THTE_1894
Entry
THTE_1894         CDS       T05034                                 
Name
(GenBank) Transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ttf  Thermogutta terrifontis
Pathway
ttf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ttf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    THTE_1894
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ttf03400]
    THTE_1894
Enzymes [BR:ttf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     THTE_1894
DNA repair and recombination proteins [BR:ttf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      THTE_1894
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H RecG_dom3_C IstB_IS21
Other DBs
NCBI-ProteinID: ASV74496
UniProt: A0A286REV8
Position
1927344..1930448
AA seq 1034 aa
MVASLVAACPGVVLVVAPDEQLADAILEDLKLFGIDEVVLFPALTSPTEAPRPDDETLGQ
RLRILLRLVRAEFPRVIVASGESLLQAVPPVHVLKERLWTLKAGENLDVAAFLRAIGEHG
YRSVPTVAMPGEFSLRGGILDVFAPEWTAPLRIELFDERIESLRHFDVSSQRSVERVEEI
TLSLCALTEQPAGSLLDYLPPETWTVWIDPQGIESSSRSYLARLEKTAFHHTWETVVRDS
QKFARLEIWDIAPEAESDVFHGQMESVERFSGDVERVRDELDAVAGDSRVYLVCTASAEI
ERLRELFASTQIASSGNLHFVVGRLSRGFRLRPEKIVLISVNQLFQRTELRIPARRPESR
PIEDFLDLKEGDLVVHVAHGIARYRGLKLLQKGDQLEEHLLLEFAEGTKLYVPTSKIGLV
QKYIGGARARPKLSKLGGRTWTRQKQAVAAAVFDLAAEMLEMQAIRQTRPGIAFPPDTIW
QQEFDASFPFEETPDQLEAMAAIKRDMMSPRPMDRLLCGDVGFGKTELAMRAAFKAVDAG
YQVAMLVPTTILAEQHVRTFRERMAEFPIRIECLSRFCTPREETEILQGLAEGAIDIVIG
THRLVQPDVRFHNLGLVIIDEEQRFGVEIKERLKSFRQTVDVLTMTATPIPRTLHMALVG
LRDISTLRTPPQDRFAVETHVCRFDPHLIRQAVLRELNRHGQIYFVHNRVKDIDAVYRIL
CQIVPEARIRVAHAQMPDHQLEEIMLAFVRHEFDLLLTTTIIESGLDIPSANTIFIDMAE
RFGLADLHQLRGRVGRYKHRAYCYLLIHPHQRLNPNARRRLQAIEEYSELGAGFALAMRD
LEIRGAGNILGTEQSGHIAAVGYELYCELLEQAVRRLKKLPPATSIDVDVDLPCQAYLPD
SYIPDIRTKIDLYRKLARLTEVAQLTDFAQELRDRFGPLPPPVERLLELHELRIHAHWWR
IRNIHQEATFVVFQYVSRRKMENLQKLAKGRLRIVDHESAYLVADDWVGDIDQLLSALKS
LLQQRPEDPYNPRA
NT seq 3105 nt   +upstreamnt  +downstreamnt
ttggtggccagccttgtcgcggcatgcccgggcgttgtgctcgtggtcgcgcctgacgag
cagctcgccgatgcgattctggaggacctcaagcttttcggaattgatgaggttgttctt
ttccccgcgctgacgtcgcccaccgaagctccccgtccggacgacgagacgttgggccag
cggttaaggattctgttacgtctggttcgcgctgagttcccacgggtgattgtcgcctcc
ggggagtcccttctccaggccgttccccccgtccatgtgctcaaagaaagactgtggacg
ttgaaagccggtgagaacctggacgttgcggcatttttaagggccatcggggaacatggc
taccggagcgtcccgacggtcgcaatgccgggcgagttctcattgcggggcggaattctc
gatgtatttgctcccgagtggacggctcctctccgcatcgaacttttcgacgagcgtatc
gaatcgctccggcatttcgatgtttcgtcccagcgaagtgtggagcgggtggaggaaatc
acgcttagcctttgtgccctcaccgaacagccggcaggatcgttgctcgattatctgccg
cccgaaacctggacggtctggattgatccccagggcattgagtcctcttcacggagttac
ctcgcgcggttggagaagaccgcatttcatcacacctgggaaacggtggttcgcgattcc
cagaagttcgcgcgtctggaaatatgggatatcgcgccggaagccgaaagcgatgttttc
cacgggcagatggaatcagtggagcggttttccggggatgtcgagcgggtgcgggacgag
ctggacgcggtggccggtgactcccgcgtgtacctggtatgcaccgcgtctgccgagatt
gagcgactccgcgagctttttgccagcacgcaaattgccagctccggaaatctccatttt
gtggttggacgcctctcgcggggatttcgacttcggcctgagaagatcgttctcatcagc
gtcaatcagcttttccagcgaaccgaactccgcatccccgcacgacggccagagtctcgc
cccatcgaagattttttggatctgaaagagggagacctggtggttcacgtggcacacggc
attgcccggtatcgtggattgaagctccttcagaagggtgatcagctcgaggagcatctg
ctgctcgaatttgccgagggcaccaagctctacgtgccgacctccaagattggtctggtt
cagaaatacatcggcggtgcccgggcccggccgaaattgtccaagcttggcggacgaacc
tggaccaggcaaaagcaggcggtggcggcggcagtttttgatctggcggcggaaatgctc
gagatgcaagccatccggcagacccgtcccggcatcgcctttcctcccgataccatttgg
cagcaggagttcgatgcctccttcccatttgaagaaacgccggaccagttggaggccatg
gccgccatcaaacgcgacatgatgagtccgcggcccatggaccgactcctctgtggggac
gttggctttggcaaaacggaactggcgatgcgggcggcttttaaggcagtggatgctggc
taccaggttgcgatgctggttccgacgacgatcctggccgaacagcacgtgaggactttc
cgagaaaggatggcggagttccccatccggatcgagtgcctatcccgtttttgtacgccc
cgggaagaaactgagatccttcaagggcttgccgaaggggcgatcgatattgtcatcgga
acgcaccgactggtccaaccggatgttcgctttcacaacctgggattggtgatcatcgac
gaagaacagcgattcggcgtggaaatcaaagagcgtctgaaatcgttccggcaaaccgtg
gacgtgctcaccatgacggccacgcccattccccgcacgcttcacatggcgctggtcgga
ctgcgtgatatcagtacgctcaggacacctcctcaggatcgctttgctgttgagacacac
gtgtgccgatttgatccccatttgattcgacaggctgtgttgcgggagttgaaccgccac
ggccagatctactttgttcacaatcgagtcaaggatatcgacgcggtttaccgcattctc
tgccaaatcgttcctgaggcacgtatccgggtagcccacgcgcaaatgcccgatcatcag
ctcgaagagatcatgctagcgtttgtgcgtcatgaatttgatcttcttctgaccacaacg
attattgagagtgggttggacatcccatcggcaaatacgattttcattgacatggcggaa
cgcttcggtctggccgatttgcaccagcttcggggtcgggtcggccgttacaagcaccgg
gcctactgctatttgctgatccatcctcatcagcggctcaatcccaatgcccggcggcgg
ttgcaggcgattgaggaatacagcgagctcggtgcggggtttgcgctggccatgcgagac
ctggaaatccgtggggcgggcaatattctggggaccgaacagagtggccacatcgcggcg
gtgggatatgagctgtactgcgaacttctcgagcaggccgtccgccgtctcaagaagtta
ccgccagcaacttccattgacgtggacgtggacctgccgtgccaggcttatctccccgat
tcatacattccggatattcgcacgaagattgatctttatcggaagctggctcgtcttacc
gaagttgctcagctaaccgatttcgcccaggaattgcgagatcgctttggtcccctaccc
ccacccgtggaacggctgttagagctgcacgaattgcggatccatgctcactggtggcgg
attcgtaacatccatcaggaagcgacctttgtcgtcttccagtatgtctcccgcagaaaa
atggaaaatttacagaaactggcgaaaggacgtctccgaatcgtggaccacgagtctgct
tatctggttgccgacgattgggtgggcgatatcgaccagcttctctccgcgctcaaatcg
ctgttgcagcagcgtcccgaggatccttataatccgcgggcttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (72)   

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